Acidithiobacillus ferridurans: AFERRID_07800
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Entry
AFERRID_07800 CDS
T05847
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
afj
Acidithiobacillus ferridurans
Brite
KEGG Orthology (KO) [BR:
afj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
afj03009
]
AFERRID_07800
Enzymes [BR:
afj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
AFERRID_07800
Ribosome biogenesis [BR:
afj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AFERRID_07800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
TRM5-TYW2_MTfase
TRAM
Methyltransf_31
Methyltransf_15
MTS
Methyltransf_11
Methyltr_RsmB-F
Cons_hypoth95
CMAS
PrmA
RrnaAD
UPF0020
Methyltransf_23
PCMT
Motif
Other DBs
NCBI-ProteinID:
BBF64562
UniProt:
A0A2Z6IG56
LinkDB
All DBs
Position
complement(758689..760011)
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AA seq
440 aa
AA seq
DB search
MSRPKPIHNAQPEQVFIESLDTEGRGIARVEGKVLFVDGALPGERVWARRTQNHKSFDRA
ELLQVVKASSLRVSPPCPHFGVCGGCSLQHLEPAAQVAIKQRQLEDHLWRIGKVRPERVL
PPIHGPSLGYRSKARLSVRTPKTRGAMVGFRERNSSYVVDMGQCLTLDPRVGQRILPLRA
LIAQMQSPQDFPQIEVAATPDAVALVFRHMRPLAESDLQHLRAFGAQHDLQIWLQPRGPE
TLYPLWPEQPEPLHYDLPDYALRLRFDPLVFTQVNQAANQVMVRRAMALLQPQPGEHILD
LFCGLGNFTLPIARLGAQVLGIEGDARLVALAAENAAANGLADKARYAVADLTQARMEDF
ASAGAIDKMLIDPPRSGAIEVLRSLTPGVRRLVYVSCNPATLARDTEYLVHERGYRLRAA
GVVNMFPHTAHVESIALFER
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtcccaagcccattcataacgctcagcctgagcaggtgtttattgaaagtctg
gataccgagggacgcggaattgcccgtgtggagggcaaggtactgtttgtcgatggggcg
ctgcccggcgagcgggtctgggcacggcgtacccagaaccacaagagctttgatcgtgcc
gagttgctgcaggtggtcaaggcgtcctccctgcgggtgtcgccgccttgtcctcacttt
ggtgtctgcgggggctgcagcctgcagcatctggagccagcggcacaggtggctatcaag
caaagacaactggaagatcatctctggcgcatcggcaaggtccgccccgaacgcgtcctg
ccacccattcatggcccgagcctgggctatcgcagcaaggcgcggctctcggtgcgcacg
ccgaaaacccggggcgcgatggtgggctttcgtgaacgcaacagcagttacgtcgtggat
atggggcaatgtctgaccctcgacccgcgcgtcgggcaacgcattctgcccctgcgggcg
ctgatcgcgcagatgcagtcgccccaggatttcccacagatcgaagtggcggccacgccg
gatgccgtcgcgctggtgtttcgtcacatgcggccgctggcggaaagtgatctgcagcac
ctgcgcgcttttggtgcgcaacacgacctgcagatatggttgcaaccgcgcgggcccgag
accctgtatcccttgtggccggagcagccggagccgctccattacgacctgccggattat
gcgttgcgcctgcgttttgatcccctggtctttactcaggtcaatcaggcggcgaatcag
gtgatggtgcgccgcgccatggccttgttgcaaccacaaccgggagagcacattctggac
ctcttctgcgggctcgggaattttaccctgcccatcgcccgcttgggagcgcaggtgctt
ggcattgaaggagatgcccggttggttgcgctggctgcggagaatgccgccgccaacggc
ctggcggataaagcccggtatgctgtagccgatctcacccaggcccggatggaagatttt
gcttcggcgggcgccatcgacaaaatgctcatcgacccgccccgcagtggagccatcgaa
gtgttgcgcagtctgacccccggcgtccgccgtctggtgtatgtctcctgcaatccggcg
accctggcccgtgacaccgagtatctggtacatgagcgcggctatcgtttgcgagcggca
ggtgtcgtcaacatgtttccccatactgcccatgtcgaatccattgccctcttcgaacgc
tga
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