Acidithiobacillus ferridurans: AFERRID_10840
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Entry
AFERRID_10840 CDS
T05847
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
afj
Acidithiobacillus ferridurans
Pathway
afj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AFERRID_10840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afj03021
]
AFERRID_10840
03400 DNA repair and recombination proteins [BR:
afj03400
]
AFERRID_10840
Enzymes [BR:
afj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AFERRID_10840
Transcription machinery [BR:
afj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AFERRID_10840
DNA repair and recombination proteins [BR:
afj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AFERRID_10840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Tail_completion_gp17
Motif
Other DBs
NCBI-ProteinID:
BBF64866
UniProt:
A0A2Z6IHL4
LinkDB
All DBs
Position
complement(1064511..1068674)
Genome browser
AA seq
1387 aa
AA seq
DB search
MDALKDLLKLFKQNDQQEEFDAIRIGIASPDKVRSWSFGEVKKPETINYRTFKPEREGLF
CAKIFGPIKDYECLCGKYKRLKHRGVVCEKCGVEVTQARVRRERMGHIELASPVAHIWFL
KSLPSRMGMILDMPLRDIERVLYFEAYVVVDPGVTALERGNILTEDQYLDALEEHGDEFT
AKMGAEGIRDLLRGIPLAQEIEQIRNELRESNSDTKTKKLSKRLKILEAFEQSGNRPEWM
IMEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKR
MLQEAVDALLDNGRRGRAISGPNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELRLHQCGLPKKMALELFKPFIFNKLEERGLATTIKAAKRLVEQEKPEVWDILEEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLSLEAQ
LEARTLMMSTNNILSPANGEPVIVPSQDIVLGLYYVSQERADAKGTGGVFADTAEVRRAY
ETGNLGLHARITVRFRGERIDTTAGRALLGDILPEGLPFSVINRVLKKKVIGELINTCYR
RLGIKDTVIFADQLMYTGFRMATRAGISFGAGDMVTPLEKEGILARSEDEVKAIQAQYTS
GLVTEGERYNKVVDIWSRATDEVAKAMMDRVSKDTVYLPDGSSVQQDSFNSIFMMADSGA
RGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKT
ANSGYLTRRLVDVTQDLVVVETDCGSEEGLPMTSLVEGGEIIEPLRDRVLGRVVAEDVVH
PNTGEIVILRNTLLTERHLGQLDELGVDALKVRSPLTCRSRHGVCALCYGRDLARGHLVN
AGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAQSSIDIKQGGVFRYQPNLRLVTHS
SGRHVVVGRNGEVTVTDEQGREKERYKVPYGATILVDDNAAVTAGRRVAEWDPHTRPIVS
EVGGKISLKDAVEGASVAIQTDEITGLSTLVVIDAKQRPPQGRDLRPVISLLDEHGQDLK
LPGTDLPARYFLPAKAIIAVHEGMEIHPGDILARLPVGTTKTRDITGGLPRVAELFEARR
PKDFAVIAEHEGIIGFGKDTKGKQRLIITDESGEQHEYLIPKGRHVTVYEGERVSPGEQL
VEGQPVPHDILRVLGVQALANYIVDEVQDVYRLQGVRINDKHIEVILRQMLRRVEVTSSG
DSTFIPGDQVDRARVEDESIALEAAGKELPRFTPMLLGITKASLSTESFISAASFQETTR
VLTEAAVSGKADDLRGLKENVIVGRLIPAGTGLAYHEHRRRLSRGESALSLETAVPRDMP
VSVSDMP
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgttgaaagacttactgaagctcttcaaacaaaacgatcagcaggaagaattc
gatgcgattcggatcggtatcgcgtctccggataaggtgcggtcatggtctttcggtgag
gtaaaaaaacccgagacgattaattatcggaccttcaaaccggaacgcgaaggcttgttc
tgtgccaagatctttgggccgatcaaggactacgagtgcctctgcggcaagtacaagcgc
ctgaaacaccgcggcgtggtctgcgaaaaatgcggtgttgaggtaacccaggcgagggtc
cgccgcgagcggatgggacacattgaacttgccagccctgtcgcccacatctggttcctc
aaatctctgccgagtcgtatgggcatgattctcgatatgccgctgcgtgatatcgagcgg
gtcctctattttgaagcgtatgtggtcgttgatccgggggtgaccgcgctggaacgcggg
aacatccttaccgaagaccagtacctggacgccctggaagagcatggggatgagtttacg
gcaaaaatgggcgcagagggtattcgtgacctgctgcgtggcatacccctggctcaggaa
attgagcagatccgcaatgaactgcgagagagcaactccgacacaaagaccaagaagctc
agcaagcggttgaagatcctggaggcctttgaacagtctggcaatcgtcccgaatggatg
atcatggaagtgcttccggtgctgcccccggacctgcggcccctggtgccactggatggc
ggccgttttgcaacctctgatctcaacgatctctaccggcgggtcatcaatcgtaacaac
cggctcaagcgcctgctggaactaaaggcgccggacatcatcgtgcgcaacgaaaaacgc
atgttgcaggaagccgtagacgcgctgctcgataacggtcggcgtggacgtgccatctcg
ggacccaataaacgcccgctcaagtcgcttgcggatatgatcaagggcaagcagggtcgc
ttccgtcagaatctgctgggtaaacgggtggactactccggccgctcggttatcgtcgtc
ggacctgaactgcgcctgcaccagtgcggtttgccgaagaagatggccctggagttgttc
aagccattcattttcaacaagttggaagagcgcgggctggcgaccaccatcaaggccgcc
aagcgtttggtcgagcaggaaaaaccggaagtctgggatatccttgaagaggtgattcgc
gaacatccggtcatgctgaaccgcgcgccaaccttgcatcgcctgggtatccaggccttt
gaaccggtcctgatcgaaggcaaggccatccaactgcatccactggtatgtgcggcatac
aatgcggattttgacggtgatcagatggctgtgcacgtcccgctgtcgctggaggcgcag
ttggaagcccggaccctgatgatgtccaccaacaatattctcagcccggccaatggtgag
cccgttatcgtcccgtcccaggacatcgtcctcggactctactacgtcagccaggagcgg
gccgacgccaagggcacgggcggggtcttcgcggatacggcagaggtgcggcgcgcctat
gaaacgggcaacctgggtctgcatgcccgtatcaccgtgcgctttcgcggtgagcgtatc
gataccacggcaggacgcgccctgctcggggatattctccccgaggggctgccgttcagt
gtcatcaaccgggtactgaagaagaaggtgatcggcgaacttatcaatacctgttaccgg
cgtttgggtatcaaggatacggttatctttgcggatcagttgatgtataccggcttccgt
atggcgacacgcgcaggcatttcctttggtgccggggatatggtcacgccgctggaaaaa
gagggcatcctggcgcggtccgaagatgaggtcaaagccattcaggcccaatacacctcg
ggtctggtgaccgagggtgaacgttataacaaggtcgtcgacatctggtcgcgggctacc
gacgaagttgccaaagccatgatggatcgagtcagtaaggataccgtgtacctcccggac
ggcagttcggtgcagcaggattcgttcaactcgatctttatgatggcggattccggcgcc
cgaggttcggcggcgcagattcgccagcttgcaggcatgcgcggcctgatggcgaagccc
gacggttctattatcgagactcccatcaccgcaaatttccgtgaagggctcaacgtcctg
caatacttcatttccacccatggtgcccgcaagggacttgcagataccgcgctgaaaacc
gccaactccggctatttaacccggcgtctggtagacgttacccaggatctggtggtggtc
gagaccgattgtggatcggaggaaggcctgcccatgacctccctcgtcgagggcggtgag
atcatcgaacctctgcgcgatcgcgtgctgggtcgtgtagttgcggaggatgtggtccac
cccaacaccggtgagattgtcatcctccgcaatacgctgctgacagagcggcatctcggt
cagttggacgaactgggcgtggatgcactgaaggtgcgttcgcccctgacctgccggtca
cgccatggggtctgtgcactgtgttatgggcgtgacctggcacgtgggcatctagtcaac
gcgggtgaggcagtcggcgttatcgccgcgcaatccattggtgaaccgggtacccagctc
accatgcgtactttccacatcggtggtgcggccagtcgttctgctgcgcaaagcagtatc
gatatcaaacagggcggggtttttcgttatcagccaaaccttcgtctggttacgcacagc
agtggacgccacgtagtggtgggccggaatggggaggtgaccgtcactgacgaacaaggc
cgggaaaaagagcgttacaaggtgccctatggtgccaccattctggtggatgacaacgcc
gcggtcaccgcgggccgtcgggtcgcggaatgggatccgcatacgcggcccattgtcagc
gaggtcggcggcaaaatttctctgaaagatgcggtggaaggcgcgagcgtagccatccag
accgacgagatcaccgggctgtcgacactcgtcgtcatcgacgccaaacaacggccaccc
cagggacgggatttgcgcccggtgatcagcctgctggacgagcacggccaggacctgaag
ctgcccggtacggacctgcccgcacgctatttcctgccggcaaaggcgattatcgcggtg
cacgaaggtatggaaattcatcccggagatattctggcacgtctgccggtgggtaccaca
aagacgcgcgacattaccggtggtctgccccgtgtggcggagctgttcgaggcccggcgt
cccaaggacttcgctgttatcgcggagcacgagggcatcatcggcttcgggaaagacaca
aagggcaagcagcgactgatcatcaccgacgagagcggggaacagcatgaatatctgatt
cccaaggggcgccatgtgaccgtgtacgaaggggagcgggtcagcccgggtgagcagctt
gtcgaaggccagccggttccgcacgatatcctgcgtgtgctgggtgtgcaggctctcgcc
aactacatcgtagatgaggtgcaggacgtataccgtctgcagggcgtgcgtatcaatgat
aagcacatcgaagtcattctgcgccagatgctgcgtagggtcgaagtgacgtccagcggg
gacagtacctttattcccggagaccaggtggatcgggcacgggtggaagatgaaagcatc
gcgctggaagccgccggcaaagaactgccgcgtttcactccgatgttgctgggtatcacc
aaggcaagcctgtctaccgaatcgttcatctcggcggcaagcttccaggaaaccacccgc
gtactcactgaggctgcagtatccggcaaggcagacgacttgcgcggcctcaaggaaaac
gtcattgtcggacgtttgattcctgcaggaacgggcctggcctaccatgagcatcgccga
cggctgagtcggggtgaatctgccctttccctggagaccgcggtgccgcgcgatatgccg
gtatcggtgagcgatatgccgtaa
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