Acidithiobacillus ferridurans: AFERRID_16130
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Entry
AFERRID_16130 CDS
T05847
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
afj
Acidithiobacillus ferridurans
Pathway
afj03420
Nucleotide excision repair
afj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AFERRID_16130
03430 Mismatch repair
AFERRID_16130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afj03400
]
AFERRID_16130
Enzymes [BR:
afj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFERRID_16130
DNA repair and recombination proteins [BR:
afj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AFERRID_16130
MMR (mismatch excision repair)
Other MMR factors
AFERRID_16130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BBF65395
UniProt:
A0A2Z6IML2
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All DBs
Position
1547828..1549957
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AA seq
709 aa
AA seq
DB search
MSEWSALNPRQMEAVTLPPGPALVLAGAGSGKTRVLTSRIAHLLEGDVYPGAILAVTFTN
KAARAMRGRLDGMVAMDLRALWMGTFHGIAHRLLRMHHEVLGLPADFQVLDADDSQRLLR
RIMREAQMDEKQWPPRAMAGRIGRWKDEGWRPEQVQQYEGPAAAPFIPIYSAYEAAKKRS
GLVDFGDLLLYALRLWESPEILDHYQRRFQHILVDEFQDTNAVQYAWLKGLARNGQIFAV
GDDDQSIYAWRGARVENLLRFGEDFAGARVVRLEQNYRSTAPILQAANAVIAHNSDRLGK
TLWTAERGGEAIQLYTAYNEFDEARYVVGRVQQWLDGGGRRADCAILYRSNAQSRAFEEV
LVREGMPYRVYGGLRFFERAEIKDTLAYLRLTANRHDDASFERVVNVPARGIGAVSVERL
RNLARERGLSLWQAAGELGQPKISAFLNLVDDLAARTAEVDLGERVEMVLSRTGLREWHS
REGDRAEGRLENLDELINAARGYAQDWSADPNLGDLAPQPGNMLSEFLTHAALEAGDGAG
DAWEDCVQLMSLHSAKGLEFPLVFLVGLEEGLFPHQRSLEDPQGLAEERRLCYVGMTRAM
RLLVISHAESRRLHGSERMTMPSRFLREIPQELLRELRPRARISRPVMPVRVQTPGMPYP
LGARLQHPVFGEGMVLDYEAGGRQGRIQVQFASGSKWLALGVVALERLP
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgaatggtctgctctcaatccccgccagatggaggcggtaaccctgccgcccggt
ccggcgctggtgctggcgggggcaggatcgggaaaaacgcgggtgctgaccagtcgtatc
gcccacctgctggaaggggacgtataccctggcgcaattcttgcggtgaccttcaccaac
aaggcggcacgcgccatgcgcgggcgattggatggcatggtggccatggacttgcgggcc
ttgtggatgggcaccttccacggcatcgcccaccgtctgttgcgcatgcatcacgaagtg
ctgggcctgcctgcagactttcaggtcctggatgccgacgatagtcagcgcctgctgcgg
cggatcatgcgcgaagcgcagatggatgagaagcagtggccgccgcgcgccatggccggg
cgtatcggccgctggaaagacgagggttggcggccggaacaggtgcaacaatatgaaggt
ccggcagcggcgcccttcattcccatctacagcgcctatgaagcggctaaaaagcgctcc
gggctggtggacttcggtgacctgttgctctacgccctgcgtctttgggaatcgccggaa
atcctcgatcattatcagcgccgttttcagcatattctggtggatgagtttcaggacacc
aacgcggtgcagtacgcatggctgaaggggctggcccggaatgggcagatttttgctgtc
ggcgatgatgaccagtccatttacgcttggcggggcgcacgagtggagaatctgctccgc
ttcggcgaagactttgccggggcgcgggtggtgcgcctggagcagaactaccgttctacg
gcacccatcctgcaggcggcgaatgccgtgatcgcccacaattccgatcgtctcggcaaa
accctgtggacggcggagcggggcggtgaagccatccaactctacaccgcttacaacgaa
tttgacgaggcgcgctatgtggtgggccgcgttcagcaatggctggacggtggtgggcgg
cgtgcggactgcgccatcctctaccgctccaatgcccagtcgcgggcctttgaagaagtg
ctggtgcgtgaagggatgccctatcgggtctatggtggtctgcgctttttcgagcgagcg
gagattaaggatacgctggcctatctacgtcttaccgccaaccgtcacgatgatgcgtct
ttcgaacgggtggtgaacgtgccagcgcggggcattggtgcggtcagtgtcgagcgtctg
cggaatctggcccgcgagcgcggcctctcgctctggcaggccgccggcgaactcggtcag
ccgaaaatcagtgcgttcctcaatctggtggatgatctcgccgcacgaacggcggaggtg
gatctcggcgagcgggtggagatggtactgtcccgcaccggcctacgtgagtggcacagt
cgcgagggcgaccgcgccgaaggccgcctggagaatctggatgagctgatcaatgcggca
cgcggctatgcccaggactggtccgccgaccccaatctcggtgatcttgcgccgcaaccg
ggcaatatgctctcggagttcctgacccacgctgccctggaagccggggatggcgccgga
gacgcctgggaggactgtgtgcagttgatgagcctgcacagcgccaagggcctggagttc
ccgctggtgtttctggtggggctggaagaggggctgtttccccatcagcgctctctggaa
gacccccaggggctggctgaggaacggcgcctgtgttatgtcggcatgacccgggccatg
cgtctgctggtcatcagccatgccgagagccgccgcctgcacggcagtgagcggatgacc
atgccctcgcgctttctgcgggagattccccaggaactgctgcgggagctgaggccccgg
gcacggatcagccgacctgtcatgccagtgcgagtacagacacccggaatgccctatcct
ctgggggcgcgcctccagcacccggtctttggcgagggaatggtgctggattatgaggct
ggcggtcgccagggccggattcaggtgcagtttgcgtcgggaagcaaatggctggcgctg
ggggtggtggctttggagcggttaccttaa
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