Acidithiobacillus ferridurans: AFERRID_18210
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Entry
AFERRID_18210 CDS
T05847
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
afj
Acidithiobacillus ferridurans
Pathway
afj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFERRID_18210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afj03019
]
AFERRID_18210
03009 Ribosome biogenesis [BR:
afj03009
]
AFERRID_18210
Enzymes [BR:
afj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AFERRID_18210
Messenger RNA biogenesis [BR:
afj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFERRID_18210
Ribosome biogenesis [BR:
afj03009
]
Prokaryotic type
rRNA helicases
AFERRID_18210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
BBF65603
UniProt:
A0A2Z6IN90
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All DBs
Position
1755792..1757648
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AA seq
618 aa
AA seq
DB search
MSQETDLRFIDFALAEPIQKAVTEIGYEQPSPIQAQSIPPLLEGRDVIGLAQTGTGKTAA
FALPLLSRVDLSLRAPQLLVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQAMTLQL
KQLQRGVQVVVGTPGRIQDHLRRKTLRLDQLQAVVLDEADEMLRMGFIDAVEDILKHTPE
DRQVALFSATMPDAIRRIAKTYLRNPLEIRIKSATTTVAAIRQRYWQVSGTHKLDALTRI
LEVEDSNAWLVFVRTKTATVELAERLEARGYACGALNGDLSQAMREQTIERLKAGTLDIV
VATDVAARGLDVERISHVINYDIPNDTEAYVHRIGRTGRAGRTGDAILFVAPRERHLLHA
IERATGQTITAMHLPSIEDVADRRMRQFKDQLTEVLNSQDLAVFETLIADYQRESDVGLG
EIAAALAYMVQKERPLIPVEAEVSRPMRSDSAGSGAGRPPSSRRRADDERGARPPRGAAA
PGRGDDVPMRCFRLDVGESHGAQVKNIVGAIANEAGIPSRNIRKVQIHEEHTTVELPADI
QPSVLQHLQKVWVAGRPLQISSTDAGASAGRASARTRPASSHEESRVPRKILSARTEKGE
YKTKEHGAGATKRKKPAR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagaaaccgatctccgctttattgattttgccctcgctgaaccgatccaaaag
gcggttacagagatcggctatgaacagccatcccccattcaggcgcagagcattccgcct
ctgctcgaggggcgggacgttatcggcctggcgcagaccggtaccggcaagactgccgcc
tttgcgctgccgttgctgagtcgtgttgacctcagcttgcgcgcgccgcagttgctggta
ctcgcgccgactcgtgagctcgccatacaggtagcggaggccatgcaaagttatgccaag
ttcctccccggatttcatgtgctgcccatctatggtgggcaggccatgaccttgcagctc
aagcagttgcagcggggtgtgcaggtcgtggtgggtacgcccggacgcattcaggatcat
ctgcgccgcaaaaccttgcgtctggatcagttgcaggccgtggtgctggatgaagccgat
gagatgctgcgcatgggctttatcgacgcagtggaggatatcctcaaacacacgcccgaa
gaccgacaggtggcgctgttttctgcaaccatgcccgacgccatccgccgcatcgccaaa
acctatttacgcaatcccttggaaatccggattaaatcagcgacgaccacggtggctgcc
attcgtcagcgctactggcaggtcagcggcacccacaagctggatgcccttacccgtatt
ttggaagtagaggacagtaacgcctggctggtttttgtgcgtaccaaaacggcgacagtg
gagttggcggagcgcctggaagcacgcggttatgcctgtggcgcgcttaacggcgatctc
agtcaggccatgcgcgagcagaccattgagcgactgaaagccgggacactggatatagtc
gttgcgaccgatgtggcggcccgcggtttggatgtcgagcggatcagccatgtgatcaac
tatgacattcctaatgataccgaagcctatgtccaccgtatcgggcgcacgggacgtgcc
ggacgtaccggagatgcgattctttttgttgcaccacgcgaacgtcacctgctgcacgcc
atcgagcgcgcgacggggcagacgatcaccgcgatgcatctgcccagcatcgaagatgtc
gccgacaggcggatgaggcagttcaaggatcagttgacggaggtgctgaatagccaggat
ctggccgtctttgaaacccttattgcggattatcagcgggaaagcgatgtggggttggga
gaaatcgctgcagcgctggcatacatggtacagaaggaacggcccctgattcccgttgaa
gcggaggtgtccaggccgatgcgtagtgactccgccggttcgggcgctggccgccctcct
tcctcccgtcgccgcgctgacgacgagcggggcgcacggccaccgcgaggtgctgctgca
ccggggaggggcgatgatgtgcccatgcgttgtttccggctggatgtgggcgaaagccac
ggtgcgcaggtcaagaatattgttggtgcgatcgccaatgaagctgggatacccagccgc
aatattcgcaaggtacagatccatgaggagcacactacggtcgaacttcctgcggatata
cagccgtccgtgctgcagcatctgcaaaaggtgtgggtagccggacggccgttgcagatc
tcctcgacggatgccggtgcgtctgcagggcgggcgtcagcccgaacacgcccggctagt
agccatgaagagtcgcgggtgccgcgcaagatactctccgccagaacggaaaaaggcgag
tacaaaaccaaggagcatggcgctggagccacgaagcggaagaaacccgcgcgatag
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