Acidithiobacillus ferridurans: AFERRID_22570
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Entry
AFERRID_22570 CDS
T05847
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
afj
Acidithiobacillus ferridurans
Pathway
afj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFERRID_22570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afj03019
]
AFERRID_22570
Enzymes [BR:
afj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AFERRID_22570
Messenger RNA biogenesis [BR:
afj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFERRID_22570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
HI1480
UTP25_NTPase-like
HEM4
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BBF66039
UniProt:
A0A2Z6IKP2
LinkDB
All DBs
Position
2186637..2187893
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AA seq
418 aa
AA seq
DB search
MSSFESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPI
LHKLAATSGSASCAPSSVRALILVPTRELAAQVEASVQLYGRYLPLRSLVLIGGVKINPQ
MQKLRRSVDVLVATPGRLLDHIQQRSVDLSHVEILVLDEADRMLDMGFIRDIRRILAVLP
KKRQNLLFSATFSPEIRGLADGLLNNPTSVEVAARNATADNVAQRVFAVDQDRKRELLSH
LIEEHQWGQVLVFTRTKHGADRLARHLSQDGMQAMAIHGDKSQGARTRALAEFKEGKVQV
LVATDIAARGIDISELPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQLQ
DVEKLLRRSFDREIVVGFEPRQSFSGHAPSGVPRRPAQAAGRGRPGSGAVPSGRARRT
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttttgaatctctgggtctttctgagcctatctggcgtgcggctgccgaacgt
ggctacaccagtcccacccctattcaggaacaggccatcccggtagtcatgtccggtgtc
gacctgctggcgggcgcacagacgggtaccggcaagactgccgcgtttgccatgcccatc
ctgcacaaactggcggctacttcaggtagcgcgtcatgcgctccttccagtgtgcgtgcg
ctgattctggttcccacccgcgaactggcggcgcaggtggaggcgagcgtgcaattgtac
gggcgctatcttcccctgcgctccctggtgctcatcggtggggtcaagatcaatccccag
atgcagaaactgcgccgcagcgtggatgtcctggtagccacccccggtcgcctgctggat
catatccagcagcgcagtgtcgacctctctcacgtcgaaattctggtgcttgacgaagcc
gatcgcatgctcgacatgggctttattcgtgatatccggcgcatccttgcggtattgccg
aaaaaacgccagaacctgctgttctcggcgacgttctcgccggaaatccgtgggctggcc
gatggcctgctgaacaacccgaccagtgttgaggtcgcggcgcgcaatgctactgccgat
aatgtcgcccagcgggtttttgccgtcgatcaggaccgcaaacgcgagcttctttcccat
ctgatcgaagaacatcaatgggggcaggtgctggttttcactcgcaccaagcatggtgcc
gaccgccttgccaggcacttatcgcaggatggcatgcaggctatggcaatccatggcgat
aagagccagggcgcccgtacccgcgccctggcggagttcaaggaaggcaaagtgcaggtc
ctggtggcgacggatatcgctgcccgcggtatcgacatcagcgagctgccccacgtggtg
aactttgaacttccccatgtgccggaagattatgtccatcgtatcgggcggaccggtcgc
gccggtaacaacggccaggccgtatcgctggtgagcagcgaggagcgtaagcagttacag
gatgtggagaagctcctgcgtcgctcctttgaccgggagatcgtcgtcggtttcgagccg
cgacagtctttctccggtcatgcaccgtcaggggtgccgcgtcgtccggctcaggccgca
gggcggggtcggcccggttcaggagcggtgccttcgggtcgtgcccgccgcacctga
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