Acidithiobacillus ferridurans: AFERRID_22840
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Entry
AFERRID_22840 CDS
T05847
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
afj
Acidithiobacillus ferridurans
Pathway
afj03030
DNA replication
afj03430
Mismatch repair
afj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AFERRID_22840
03430 Mismatch repair
AFERRID_22840
03440 Homologous recombination
AFERRID_22840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afj03032
]
AFERRID_22840
03400 DNA repair and recombination proteins [BR:
afj03400
]
AFERRID_22840
Enzymes [BR:
afj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AFERRID_22840
DNA replication proteins [BR:
afj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AFERRID_22840
DNA repair and recombination proteins [BR:
afj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AFERRID_22840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BBF66066
UniProt:
A0A2Z6IKZ2
LinkDB
All DBs
Position
2213219..2216722
Genome browser
AA seq
1167 aa
AA seq
DB search
MMGAPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARA
QGVKPLIGSEVWVHDGAEPEQPVGLILLCMDKTGYRNLSRLLSRAYLEGSRHGRPQIDAA
WLEGASDGLIALSAAGQGEIGRALQRHPQQAESRARYYARLFPERFYLEVQRNGEAGQEA
LVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGVTLDDPRRPRRFTPEHRL
PDPEEMRERFADLPEACDNTVEIARRCNMELVLGRYALPDYPIPASQSVDEYLHDAAQNG
LQERLRELRISGDATLPYHERLLREVGVIQQMGFPGYFLIVADFIQWAKNNGVPVGPGRG
SGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCMDQRDRVIQYVADKYG
RDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGDLGMTLAKALEESEELRR
RQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRLPLFNDGSEGGGNVTQLD
KDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGREAVNIQQLPLDDAATFALLKS
TETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSGMVDDFIARKHGKAQVT
YLHPDLAPILRETYGVIVYQEQVMQSAQVLAGYSLGGADLLRRAMGKKKPEEMAKQRSIF
LEGAHKNGLVADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHYPQFFMSAVL
TADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDGDIRFGLGAIKGLGRAAIQ
AILDARKGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWGVSRASLIASVDRCMEA
AAQFQSSQASLQESLFSGQEALRVAPPLVSAEAWSLTETLRQERETLGFYLSGHPMDSLR
DDLAALGTMPLGDVCVGATVLVAGLVVARRSTRTKRGDRIYFLTLDDGRGRLEVVVFGEV
WAQAGKIREGEEPVLVLGEVGEDSYSGGLRLSAMRLLDMAQAREELAAQLTLELGLTADM
APQDLLAVLRKYPGQTALRLRLRVADDIIAQLRVTENLSFAASPAAIAALTALAPTAHWH
WSYRPVTLLVNNVVPLERARHAARRPA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatgggtgcgccgcagtttgtccatctgcacgtacactccgaatattccctggaagac
ggaatcattccggtcaaggcactggccagacgctgcgcggagcggggcatgccagccgtg
gcgatcacggatcacggcaacctttttgccctggtgaaattttataatgcggcccgggca
cagggcgtcaagccattgattggcagtgaagtctgggtgcatgacggggcagaaccggaa
cagccggtcggccttatcctgctgtgcatggacaaaaccggctatcgtaatctcagccgc
ctgctcagccgggcttacctggagggcagtcgccacggccgtccgcagatcgacgcggca
tggctggaaggggcgagcgacggtctcattgccctgtctgcggctgggcaaggggagatc
gggcgtgccctgcagcgccatccgcaacaggcggaaagccgggcgcgatactacgcaagg
cttttcccggaacgtttttatctggaagtgcagcgcaacggtgaggcggggcaggaggcc
ctggtccaggccacggtggcgttggcggaaaaactggatttaccgttggtggccaccaac
aatgcccactttctcgatgcggcggactttgcggccttcgatgcgcgacagtgtatttct
gcaggtgttaccctggacgacccgcgccgtccacggcgttttacgccggagcaccgcctg
ccggaccccgaagaaatgcgagagcgttttgcggacctgccggaagcttgcgacaacacc
gtcgaaattgcgcgacgctgtaatatggagctggtgctcgggcgttatgcgctaccagac
tatcccattcccgccagccagtccgtggatgaatatttgcacgacgcggcgcaaaatggt
ctgcaggaacgcttgcgggagctgcgtatcagtggcgacgccacgctgccttatcacgag
cgcctgttgcgtgaggtcggcgtcattcagcagatgggcttccccggttattttctcatc
gtcgcggatttcatccagtgggcaaaaaataatggcgtgccggtgggacctgggcgtggt
tccggcgccggatcgctggtggcctacgccctgcggatcaccgatctcgatcccatcggc
aatggcctgttgttcgagcgctttctcaaccccgaacgcgtttccatgcctgactttgac
gtggatttctgcatggatcagcgtgaccgtgtcattcagtatgtggccgacaaatatggt
cgtgaccgggtcggccagatcatcaccttcgggacgatgaaggcgcgggcggtagtgcgt
gatgtcggccgggtgctgggtctaccttatggctttgtcgaccagttggccaagctggtg
ccgggtgatctgggaatgaccctggcgaaggccctggaggaatcggaggagctgcggcga
cgccaggctgaggaagacgacgtccgcgacctgctggacatcgccctgcgcctggagggt
ttgccacgtcacgcctcgacccatgcgggtggcgtagtgatctctccggagccgctggcc
gaccgtctgccgctctttaacgacggctctgaagggggtggtaatgtcacccagctcgat
aaggacgatgtcgaaaagatggggttggtgaagttcgattttctcggtctgcgtaccttg
accatcatcgatatggcggtcaagctcatcaacgccgatgcggcagcggcgggtcgtgaa
gccgtgaatattcagcaattgcctttggacgatgcggcgacttttgccctgctcaagtcc
accgagacggcggcggtcttccaactggaatcatcgggtatgcgcgatctggtgcggcgc
ctgcagccggatacctttgaagatattgttgccctcgtcgccttgtttcggccgggaccg
ctacagtcgggtatggtggatgatttcatcgcccgcaaacacggcaaggcgcaggtaacc
tatctgcatccggatctggcaccgattctccgggaaacctatggggtgattgtctatcag
gaacaggtcatgcagtccgcccaggtgctggcgggttattccctcggcggtgccgattta
ctgcggcgggccatgggcaagaaaaagccggaggaaatggccaaacagcgcagcattttt
ctggagggagcccacaagaacggtttggtcgcggaccaggccggggccatcttcgacctc
atggaaaagtttgccgaatatggctttaacaaatcccactcggcagcctatgccctggtg
tcctaccaaaccgcttatctgaaggcccactatccacaattttttatgtctgccgtgctg
accgcagatatggaccacaccgacaaagtggtggcgatgattgccgagtgcgcgcgcatg
ggcctgcgcatcgctccaccgagcgttcagcacagtgtgctggagtttcgtccggagggg
gatggtgacatccgctttggtctgggtgccatcaagggcttgggacgggcggccattcag
gcgattctcgacgcccgtaaggggggcgccttcctgaatcttttcgatctgctctgccgg
gtggatacccagaaaatcaatcgtcgtgccctggaggcattgattcgcgccggagccatg
gatgactggggcgtgtcgcgggccagcctgatcgcgtccgtggaccgttgtatggaagca
gcagcgcagtttcagagcagtcaggcgagcctgcaggaatcattgtttagcggacaggag
gcgttgcgggtagcgccgccgctggtgtcggccgaggcatggagtctcactgaaaccctg
cgtcaggaacgggaaactctgggtttttatctcagtggtcaccccatggacagtctgcgg
gatgatctggcggcgctgggaacgatgcctcttggagacgtctgtgtcggggccacggta
ttggtggcggggttggtggtagcgcggcgcagcacccggaccaagcgcggtgatcgtatc
tatttcctgaccctcgatgatggtcgggggcggctggaggtcgtcgtctttggcgaagtc
tgggcgcaggccggcaagatccgagagggcgaggagccggtgctggttctgggtgaggtg
ggcgaggacagctattccggtggcctgcggctcagtgccatgcgtctgctggatatggca
caggcgcgggaggaattggctgcacaattgaccttggaactgggacttacggcagatatg
gctccgcaagatctgcttgccgtgctccgtaaataccccggccaaacagccttgcgcctg
cgtttgcgggtcgcagacgacattatcgcgcaattgcgggtgacggaaaacctgagcttt
gcggcgagtcccgccgccattgccgccctgacggcgttagcacccacggcacactggcac
tggagctatcggccggtgacccttctcgtcaataatgtcgtccccctggagcgtgcgcgg
cacgcggcgcgacgcccggcctga
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