Acidithiobacillus ferridurans: AFERRID_25960
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Entry
AFERRID_25960 CDS
T05847
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
afj
Acidithiobacillus ferridurans
Pathway
afj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AFERRID_25960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afj03400
]
AFERRID_25960
Enzymes [BR:
afj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AFERRID_25960
DNA repair and recombination proteins [BR:
afj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AFERRID_25960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
UvrD_C_2
OB_YrrC
HHH_5
Viral_helicase1
AAA_11
AAA_29
nSTAND3
NAT10_TcmA_helicase
HHH_2
RsgA_GTPase
UvrD-helicase
AAA_16
NTPase_1
AAA
T2SSE
AAA_22
ABC_tran
NACHT
SLFN-g3_helicase
AAA_28
PIF1
AAA_23
AAA_7
DEAD
ABC_ATPase
MeaB
ATP_bind_1
SMC_N
cobW
NPHP3_N
TsaE
AAA_5
PhoH
MobB
IstB_IS21
TrwB_AAD_bind
CbiA
RuvB_N
ATPase_2
AAA_14
MMR_HSR1
AAA_3
SRP54
Motif
Other DBs
NCBI-ProteinID:
BBF66378
UniProt:
A0A2Z6IL26
LinkDB
All DBs
Position
complement(2512609..2514792)
Genome browser
AA seq
727 aa
AA seq
DB search
MAKPERQKQDTPNELLGGLIERVTFHNDGSGFCVLRIKARGHKDLVTVVGHAASVTAGEW
ITASGIWITDRDHGLQFKAAFLKTSAPTSLDGIEKYLGSGMIRGIGPVYAKKLVQAFGDQ
VFTVIEESPERLAEVEGIGPIRRERMVSAWADQKVIREIMLFLHTHGVGTARAVRIFKTY
GTDAVRVMTENPYRLARDIHGIGFKTADAIAMKMGIELHAPIRVRAGISYALMEARDEGH
CGLPQEELIPLAEKLLEVPTAAIESALQEELQDGAIIADQVQDADCVFLAPLYRNEQGIA
SLLKQLCAGQAPWAGIAADAAIDWVQKRLNMALADSQQSAIRMVLQEKVALITGGPGVGK
TTLVNAILHILDAKKLRIALAAPTGRAAKRMSETTGKEAKTIHRLLEIDPKGGGFKRRED
YPLDIDLLVLDECSMIDVPLMHAVLKALPPEAGLLMVGDPDQLPSVGPGQVLADLIAAKT
IPEVHLTEVFRQAAQSRIIQTAHQINAGHMPDLRNPEGLSDFYFIAAEDPAEAADKLVKL
VTTHIPRRFGLDPLQDVQVLCPMNRSALGARALNEALQIALNGESTPAIEKFGRRFAPGD
KVMQIQNDYEKEVFNGDIGFVQDVDIEENTLTVDFEGRVVSYGFGELDLLQPAYAITVHK
SQGSEYAAVVIPMSTQHYPMLQRNLLYTAVTRGKRLVVLVGQKKAVAMAARNGSGKRRWS
KLREWMQ
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaccggagcgccagaagcaggacacccccaatgaactgctcggtggactgatc
gaacgggtcaccttccataacgatggaagcggcttctgtgtgctgcgcatcaaagcccgc
ggccataaggatttggttaccgtagtgggtcacgccgcttccgtgaccgccggtgaatgg
atcaccgcttcgggcatctggatcaccgatcgtgaccacggcctgcagttcaaagccgcc
tttttaaaaacctccgcgccgaccagtctggatggcatcgagaaatatctgggttccggc
atgatccggggcattggtcccgtctatgccaaaaagctcgttcaagcttttggggatcag
gtgttcaccgtcattgaagagtccccggagcggctggctgaagtggaaggcatcggtccc
attcgccgggaacgcatggtcagcgcctgggcggaccaaaaagtgatccgcgaaatcatg
ctgtttctgcacacccatggggtgggcaccgcccgggcggtgcgcatcttcaaaacctac
ggcaccgatgccgttcgggtcatgaccgaaaacccctatcggctggcccgggatattcac
ggcatcggcttcaaaaccgctgacgccatcgccatgaaaatgggtatcgaacttcatgca
ccgatacgggtccgggcaggcatctcctatgccctcatggaggcccgggatgaggggcat
tgtggattgccccaggaggaactgattccgctggcagagaaactcctggaagtcccgaca
gcggccattgaaagtgcccttcaggaagaattacaggatggggcgatcattgccgaccag
gtgcaggacgccgattgtgtctttttagcccccctctaccgcaatgaacagggcatcgcc
agtctcctgaagcagctctgtgcgggccaagccccatgggcgggtattgccgccgatgcg
gctatcgattgggtgcaaaagcgtctgaacatggctcttgccgacagccagcaatcggcc
atccgcatggtgctgcaagaaaaagtggccctgattaccggcggccccggtgtgggaaag
accacgctcgtgaacgcgatcctgcatatcctcgacgccaagaaactgcgcatcgcactg
gccgcacccaccggacgcgcggccaagcgcatgagtgaaaccaccggcaaagaggccaaa
acgattcaccggctcctcgaaatcgatcccaaaggcggcggattcaaacgccgggaggat
tatcccctcgatatcgatctgctggtcctggatgaatgctccatgatcgacgttcccttg
atgcacgccgtcctcaaagccctgccacccgaagcgggattgctgatggtgggggatccc
gatcagctgccctccgtaggccccggccaggtgctggccgatctcattgccgccaaaacc
attcccgaagtccatctgacggaagtctttcgccaggccgcgcaaagccggatcattcag
acggcgcaccagatcaatgcaggccatatgccggacctgagaaacccggagggtctcagc
gatttttacttcatcgcagcggaggatccagcggaagcggcagacaagctcgtcaagctg
gtcaccacgcatattccccgccgcttcggtctggacccactgcaggatgtccaggtactg
tgccccatgaaccggagtgcgctgggtgcccgcgcgctcaatgaagcgctccaaattgcc
ctcaacggcgaaagcactccggccatcgaaaagttcggtcgccgttttgcgcccggggac
aaggtcatgcagatccagaatgattatgaaaaagaagttttcaacggtgacattggattc
gtgcaggacgtggacatcgaagaaaacaccctgactgtggacttcgagggcagagtggtc
agctacggattcggagagctggatcttctccaaccggcctatgccatcaccgtgcacaag
agtcagggttcggagtatgctgccgtagtcattcccatgagcacgcaacactaccccatg
ctgcaacgcaatctgctctatactgctgttacccggggcaagcggctggtcgtgctcgtg
ggccagaaaaaggccgtggccatggcggcgcggaatggatccgggaaacgacggtggtca
aaactgcgggagtggatgcagtag
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