Agrilactobacillus fermenti: ACNAN0_02265
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Entry
ACNAN0_02265 CDS
T10827
Symbol
helD
Name
(GenBank) RNA polymerase recycling motor HelD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
afk Agrilactobacillus fermenti
Pathway
afk03420
Nucleotide excision repair
afk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACNAN0_02265 (helD)
03430 Mismatch repair
ACNAN0_02265 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afk03400
]
ACNAN0_02265 (helD)
Enzymes [BR:
afk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACNAN0_02265 (helD)
DNA repair and recombination proteins [BR:
afk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACNAN0_02265 (helD)
MMR (mismatch excision repair)
Other MMR factors
ACNAN0_02265 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
AAA_19
UvrD_C
AAA_30
DEAD
NACHT
prok_STING
AAA_16
Motif
Other DBs
NCBI-ProteinID:
XOU37739
LinkDB
All DBs
Position
494411..496762
Genome browser
AA seq
783 aa
AA seq
DB search
MADKVNETLSSEQIKLQAQEQKHLDGVVEKLKHRENQLDKKIKRTQAEEQGINKTFFDDV
KLNYGSDTTNMETALSIHQQQQLLLERNNSWRSAEEEKVTVQRLEQNPYFARVDFHEHGE
PRKEKIYIGLSSFTDDKGKFLIYDWRAPISSIYYEGKLGEVTYNTPDGEQTVDLSLKRQF
LIKDDQIQSMFDTTETIGDQMLLEVLGEKSTPQMKSIVTTIQKEQNQIIRDTDADLLFVQ
GAAGSGKTSAVLQRVAFLLYRYRGNLSASQVIMFSPNQLFNDYVENVLPELGEQNMVQMT
YGQFVGRRVPHLDIQSLNEQFEAEKTETQKQIINLKSSLAFFKALQAYAVHLEKADMRFK
DIKFKGKVYYSKQKIKEIYYSFNENYHLGNRLDGTKEKLIRSLNHRIDKETKSDWVQEAV
QNLSQDDLQKMYTTVDQEFNSGDDEFKFLARQVVVQQLESVHRAINKNQFLNSRAQYLNF
LRMIPKLLDLSNYGLDEAQWTAEVERVKTHLKAHEMSMPDISAYLFLYDQITGKHGNRDI
HFIFIDEIQDYTPFQLAYLKYNFPKARFTMLGDLNQAIFTKDASEDLLDQIQTLFSGEKI
KVVQLTRSYRSTQPITDFTKAILKNGQEIAAFDRQGPLPNIVLAKDEPQLLTDILAQLAQ
NDAQEMSTAIITKTLAQSEQLQQDLKDRGHDITLIRSENQRLAAGDIVIPSYLAKGLEFD
AIIAYDLSAENYHAEDERQLVYTIASRAMHTLTITAQNQLTPLLADVPQTLYTQGVTSVV
AND
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaagtaaatgagacgttaagttcagaacaaataaaattacaggcgcaagag
caaaagcatctggatggtgtggttgaaaaattaaagcaccgagaaaatcaattagataaa
aaaatcaaacgtacccaagctgaagagcagggcatcaataagactttttttgatgatgtg
aaattgaactatggcagtgacaccacgaatatggaaaccgcattatccattcatcaacag
cagcagttattattggaacgtaataatagttggcgttctgctgaagaagagaaagtcacc
gttcaacgcttggaacagaatccttactttgcccgggtcgatttccatgagcatggggaa
ccccgaaaggaaaaaatctatatcgggttaagttcattcactgatgataaaggcaagttt
ttgatctatgattggcgggcaccgatttcttctatatattatgaaggtaaattgggggaa
gtcacttataacacaccagacggtgagcaaactgtggatctttctttgaagcgtcaattc
ttgattaaagatgaccagattcaatctatgtttgataccaccgaaaccattggtgatcag
atgctgttggaagttttgggtgaaaagtcaactccacagatgaagagcatcgtcacgaca
attcaaaaagagcagaaccaaattattcgcgatacggatgccgatctcttattcgtccag
ggggcagccggttcaggtaaaacctcagcagttttgcagcgcgtggctttcttgctctat
cgttaccgcggtaatttaagtgcgagccaagtgatcatgttttcaccgaaccaattattt
aatgactacgtggaaaatgtattacctgaattgggcgaacaaaatatggtccaaatgaca
tatggtcagttcgtaggtcgccgggtaccgcatttggatattcaaagtctcaatgaacaa
ttcgaggctgaaaagactgagacgcaaaagcagatcattaatctaaaatctagcttggcc
tttttcaaagccttgcaagcttatgcggttcatttggaaaaagcagacatgcggtttaaa
gacattaaattcaaaggtaaagtttattattcgaaacaaaaaatcaaagagatttattac
agcttcaatgagaactatcatttgggcaatcggctcgatggcacgaaagaaaagctgatc
cgctcgctcaatcatcggattgataaagaaactaagtcagattgggtgcaagaggccgtc
caaaatctatctcaagatgatctgcaaaaaatgtacaccacggtcgatcaagagtttaat
tctggggatgatgaattcaagttcttggcgcgccaagttgtggttcaacaattagagtcc
gttcatcgagcaatcaataagaaccaattcttaaatagccgggcacagtatctaaacttt
ttgcggatgattcccaaactgctagatctgagcaactatgggttagacgaagctcaatgg
actgctgaagttgaacgcgtcaagacacacttgaaggcccatgagatgagtatgccagat
attagtgcctatctattcctttacgaccagatcactggcaaacatggcaatcgtgacatc
cattttatttttattgatgaaattcaagattatacaccatttcagctggcttatttgaaa
tataattttcctaaagcacggttcacgatgctgggagatcttaatcaagccatcttcacc
aaagatgccagtgaagatttgttggatcaaattcagacgctttttagtggtgaaaaaatt
aaagtcgtgcaattgacgcgttcttatcgttcaacacagccaatcaccgactttacgaaa
gctattttgaaaaatggtcaagaaattgctgcctttgataggcaagggcctttgcccaat
attgtgctggcgaaagatgaaccacaattattgaccgatatcttagcccaattagctcag
aatgatgcgcaggaaatgagcacagcaatcattactaagaccttagcgcaaagtgaacaa
ttacaacaagatttgaaagatcgcggtcatgacattactttgatccgttcagaaaatcag
cgtttggcggccggcgatattgtcattccgtcttatttagccaaaggtttagaatttgac
gccattattgcttatgatttatccgctgagaattaccatgctgaagacgaacgccaactg
gtctatacgattgcttctcgggcaatgcacacgttgacgatcaccgcgcaaaatcagttg
acaccattattagctgatgtaccacaaacgttatatacgcagggcgttacgtccgttgta
gccaatgattga
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