Agrilactobacillus fermenti: ACNAN0_08800
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Entry
ACNAN0_08800 CDS
T10827
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
afk Agrilactobacillus fermenti
Brite
KEGG Orthology (KO) [BR:
afk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afk03019
]
ACNAN0_08800
03009 Ribosome biogenesis [BR:
afk03009
]
ACNAN0_08800
Enzymes [BR:
afk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACNAN0_08800
Messenger RNA biogenesis [BR:
afk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACNAN0_08800
Ribosome biogenesis [BR:
afk03009
]
Prokaryotic type
rRNA helicases
ACNAN0_08800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
Flavi_DEAD
AAA_30
Mob_Pre
DUF2608
VP17_central_barrel
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
XOU36577
LinkDB
All DBs
Position
complement(1758222..1759556)
Genome browser
AA seq
444 aa
AA seq
DB search
MAATFKQFNFSPQMIQALDKIGFTTPTSVQEKLLPAVLSGRDVVGQSQTGSGKTHTFLIP
ILEKIDVNSQKVQAVVTAPSRELATQLYQAFEQLVATYDPDIMVHNYVGGTDKARQIEKL
QHHQPQIVIGTPGRILDLITANALQVQTAKTFVVDEADMTLDLGFLPDVDKIAGKMPKEL
QILVFSATIPPKLQPFLRKYLHNPLFEQIQPKTLIPETIHNYLYFTQGRDKNALLYRLLT
MGEPYLVLIFANTKEKVDEVYDFLKHNGLNVAKVHGGIQARERKRVMKAVVNLQYQYVVA
TDLAARGIDIPGVSHVVNYELPSDLEFFIHRVGRTGRNGMSGVAYTLYGPDETRGVDALE
KMGISFESVRLKDGVLVPAKDRHQRENRHAKGNELEPSLKGYVKKAKRKRKPGYKRKIKA
AIQEDARQKRKIEQRRLKRKKRKG
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaacctttaaacaatttaatttttcgcctcagatgattcaagctttagacaaa
atcggctttacaacaccgacttctgtccaagaaaagttattaccagcagtgctatctggc
cgtgatgttgttggacaatcacaaactggcagcggtaaaacacatacatttttaattcca
attttagaaaaaattgatgttaacagccaaaaagtacaagcagtggtcactgcgccaagt
cgagagttggcaacacaattgtatcaagcgtttgaacaattagttgctacctatgaccct
gatatcatggtgcataattatgttggtgggacggataaagcccggcaaattgagaaactg
caacatcatcaaccacaaattgtgattgggacaccaggccggattttagatttgatcacg
gctaacgctttgcaagttcaaaccgcgaaaacctttgttgtggatgaagctgatatgact
ttagaccttgggtttttaccagatgtggataagattgctggtaaaatgcctaaggaacta
caaatattagttttctccgcaacaatcccccccaagttgcagccttttttgcgtaaatac
ttacacaatccattgtttgaacaaatccaaccaaaaacattgattcctgaaaccattcat
aattatttgtattttacccaaggccgcgataaaaatgcgttattatatcgtttgttaacc
atgggtgaaccctacttggtcttgatttttgcaaataccaaagaaaaagtagacgaagtt
tatgactttttgaagcataatggtttaaatgtggccaaagtgcatggcggcattcaagcc
cgcgaacgtaaacgggtgatgaaagccgtggttaatttgcaatatcaatacgtggtggct
actgatctagctgcccggggaattgatattcctggcgtttctcatgtggtaaattatgag
ttgccatctgacttagagttcttcattcaccgcgtgggtcgaacagggcgtaatggcatg
tctggcgttgcctatactttatatggccccgatgaaacgcgtggtgttgatgctttagaa
aaaatgggcatctcattcgaatctgtccgcttaaaagatggtgtgttagtgccggcaaaa
gaccggcaccaacgggaaaatcggcatgctaaaggcaatgagttagagccttcattaaaa
gggtatgtcaaaaaagccaaacgtaaacgcaagccgggttataaacgcaaaattaaagca
gccattcaagaagacgcgcgtcaaaagcggaaaattgagcaacgacgcctaaaacgtaag
aaaaggaagggttaa
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