Agrilactobacillus fermenti: ACNAN0_09800
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Entry
ACNAN0_09800 CDS
T10827
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afk Agrilactobacillus fermenti
Pathway
afk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACNAN0_09800 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afk03400
]
ACNAN0_09800 (mfd)
Enzymes [BR:
afk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACNAN0_09800 (mfd)
DNA repair and recombination proteins [BR:
afk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACNAN0_09800 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
AAA_16
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
XOU38576
LinkDB
All DBs
Position
complement(1942340..1945864)
Genome browser
AA seq
1174 aa
AA seq
DB search
MNLFDQAGQISQVAGALTLDSRQLVTGLEGSAKSVWLAGLLKQSHKNILYVTANQQQVEY
LNSDLVGLVGEGAVQVFPAAEVLAAEVGPSSPEALSQRIQALARLTTGQPTIVLTTLAGV
QKYVSKPDQFTRRAIMIDMQSQLDLTQLAQDLVAMGYVRQKLVASPGEFAIRGDIFDVFP
INASLPYRIELFDTDVDSLRSFDPETQRSVENLEQLQLLPATDLMLTSTQLQAAAERLTK
QLAQRLPELEAEPQLQQNLQQKIQQVIDLLDSGGRPDRLSLFLNELQVQMGTLLDYFASA
DTLILDDYPRILEQSRNREQEAADWQTQLLENGDILRVEPLEADFIKQLKKDQRPRVYLS
LFQKGMGRLRLDEIVNLKARVPQKFFSQMPMVKTEMDHWAKSEATVVVLIDQATRLEKVA
STFRDFEINSVIVEADQIKPNKIQLTLGQLQSGFEQIDQKTVVLTETELFNQPPKKKVRS
LAIDNAERIKSYNDLKPGDYVVHVNHGIGKFLGTQTMAVDGVHRDYLTILYQNNAKLFIP
VTQLNLVQKYVASEGKAPHINKLGGTEWQKTKRRVASKIEDIADDLIELYAKRESEKGFA
FSPDNAYQHEFEAAFPYTETADQLRSVAEIKHDMERSRPMDRLLVGDVGFGKTEVALRAA
FKAVQDNKQVAFLVPTTILAQQHFETMTQRFADFPVNIGVLSRFQSRAQVTETLKKLKNG
QLDIVVGTHRLLSQDVRFSDLGLLIIDEEQRFGVKHKEKIKQLRANIDVLTLTATPIPRT
LNMSMVGVRDLSVIETPPTNRYPIQTYVMEQNAGAIREAIKREIERNGQVFYLHNRVSDI
ERVVDQLQQLVPEATIVYAHGQMTEVQLENVIMSFVNGEADVLVATTIIESGIDMPNANT
MIVENADHYGLSQLYQLRGRVGRSSRVAYAYFTYKPDKVLTEVSEKRLQAIKDFTELGSG
FKIAMRDLSIRGAGNLLGAQQHGFIDSVGYDLYSQMLSEAVAKKKGDAAVKRTDSEIDLK
VEAYIPSDYIEDEQQKIEMYKRIRQIDAAQDIEAIEDDLIDRFGDYPIEVKRLLQIAELK
MAADQALVTNVNQQAQKVTVVLSQQGFALIKGEGVFKALAKTKLHASVQDETKDIKVILT
IQPKMGLDDWLPQIVAFVAGLAQQVSDGAAVKNK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ataaatttattcgaccaggcgggtcagatcagtcaggtggctggtgctttaactctagac
agtcgccagctcgtcacgggcttagagggatcagccaaatccgtttggttggctggtcta
ttaaaacaaagtcacaagaatattttgtatgtgactgccaatcagcagcaagtcgagtat
ttgaatagtgatttggttggtctggtcggtgaaggcgcagtacaagtctttcccgccgct
gaagttttggccgctgaagtaggacctagttcaccggaagccttgtcccagcggattcaa
gcgttggcgcgcttgacgactggacagccaaccattgttttaaccacattagctggcgtt
caaaagtatgtttcaaaacctgatcaatttacgcgaagggctattatgatcgatatgcaa
agccagcttgatctgacgcaattagcgcaggatttggtggctatgggttatgtgcgccaa
aaattagttgcctctcccggtgaatttgcgattcgtggggatatttttgatgtgtttcca
attaatgccagcttaccgtatcgaattgagttgtttgatactgatgtggatagcctgcgt
tcttttgatcccgaaacccagcgcagtgtggaaaatttggagcagctgcaattattacct
gctacggatctgatgctgaccagcacacaattacaagcggctgctgaacgcttgaccaaa
caactggcacaacgtttaccagaattagaagccgagccacagctccagcagaatttacag
cagaaaattcagcaagtgatcgatttgttagatagtggtgggcggccagatagattaagt
ttatttttaaatgaacttcaagttcaaatgggcacgttactagattattttgcgtcggcc
gacaccctcatcttagatgactatccgcggattttggaacaaagccgaaatcgtgagcaa
gaagctgctgactggcagacgcaattgttagaaaatggggatattttacgtgttgaaccc
ttggaagccgattttataaagcaattaaagaaagatcaacggccacgtgtctacctctca
ttattccaaaaagggatgggccgcttacggttagatgaaatcgtcaacttaaaagcccgc
gtgccacagaaattcttcagtcagatgcccatggtcaaaacagaaatggatcactgggct
aaaagtgaagctacggtagttgttttgattgatcaggcgactcggctagaaaaggtcgcc
agcacttttagagattttgaaatcaacagtgtcattgttgaagctgatcaaattaaacct
aataagatccaattaacattgggccaactacagtctggctttgaacagatcgaccaaaag
accgttgttttgacggagaccgaattatttaaccaaccgcctaagaaaaaagtacgctcg
ttagcaattgataatgcggaacgtatcaaaagctataatgatttaaagcctggcgattat
gtggtccatgttaatcatgggatcggtaagtttttgggtacgcagactatggcagtcgat
ggggtacatcgtgattatctaacaattctttatcaaaacaatgccaaattatttatccca
gttacacagttgaatttagttcaaaaatacgtggcttctgaaggtaaagcaccacacatc
aataagctaggcgggaccgaatggcaaaagacgaaacggcgtgtggcctcaaagattgaa
gatattgcggatgatttgatcgaactttatgccaaacgtgaatccgagaaggggtttgct
ttttcacctgacaatgcttatcaacatgaatttgaagcggcttttccttatacggagaca
gctgatcaactgcgtagtgtcgctgaaatcaagcatgatatggagcggagtcggccgatg
gaccgtttattggtgggtgatgttggttttggcaaaacggaagtcgctttaagggctgct
tttaaggctgttcaagataataaacaagtggctttcttagtgccaactacgattttagcg
cagcagcactttgaaactatgacccagcgttttgctgactttccggtaaatattggggtg
ttatctcgctttcaaagtcgagctcaagttaccgaaacgcttaagaagttaaagaacggt
cagcttgatattgtggtcggtacacaccgactgctgtcacaagacgtgcgctttagtgat
ttaggcttgctaattattgatgaggagcagcggtttggcgttaagcacaaagaaaaaatc
aaacagttgcgggcaaacattgatgtgttgactttgacggcgacaccaattccccgaacg
ttaaacatgtcgatggtgggggttcgggatttgtctgtcattgaaacaccgcccaccaat
cgttacccaattcagacgtatgttatggaacaaaatgctggggcaattcgggaagccatc
aaacgtgaaattgaacgtaacggacaagtgttttacttacacaaccgagtcagtgatatt
gaacgcgttgttgaccaattacaacagttggttcccgaagcaactattgtttatgcccac
ggtcagatgactgaagttcaactggaaaatgtcattatgagttttgtcaatggcgaggcg
gacgtgctggtggcaacgacgattattgaatctggcatcgacatgcccaatgcaaataca
atgattgttgagaatgcggatcattatggcctatcacaactgtatcagctgcggggacga
gtcggtcgcagcagccgggtggcctatgcttactttacttataagcctgacaaggttttg
accgaagtgagtgaaaaaagactacaagctattaaggactttactgagctaggctcaggt
ttcaaaattgcgatgcgcgatctttccattcgtggtgccgggaatttgttaggcgcccag
cagcacggctttattgatagtgtcggctatgatctttattcacagatgttatctgaagct
gtagctaagaagaaaggtgatgcagccgtcaagcgaacggacagtgaaattgatctcaaa
gttgaagcttatattccttcagactatattgaagatgaacagcaaaaaattgagatgtat
aaacgtatccgtcaaattgatgccgctcaagacattgaggccattgaagatgacttgatc
gaccgctttggggattatccgattgaagtgaagcggctgttgcagattgctgagttgaaa
atggcagctgatcaagctttggtaaccaacgtcaatcaacaagctcaaaaagttacggtt
gttttatcgcaacagggctttgctctcattaagggtgagggggttttcaaagctctggct
aagacaaaactccatgctagtgtccaagatgagacaaaagatattaaagttattttaacg
attcagcccaagatggggctagatgattggctgccacaaattgttgcttttgttgctgga
ttagcgcaacaggtcagtgatggtgcagccgttaaaaataagtag
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integrated database retrieval system
