Anoxybacillus flavithermus: Aflv_0194
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Entry
Aflv_0194 CDS
T00790
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
afl
Anoxybacillus flavithermus
Pathway
afl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aflv_0194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afl03019
]
Aflv_0194
03009 Ribosome biogenesis [BR:
afl03009
]
Aflv_0194
Enzymes [BR:
afl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Aflv_0194
Messenger RNA biogenesis [BR:
afl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Aflv_0194
Ribosome biogenesis [BR:
afl03009
]
Prokaryotic type
rRNA helicases
Aflv_0194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
NDK
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACJ32578
UniProt:
B7GIY0
LinkDB
All DBs
Position
204772..206187
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AA seq
471 aa
AA seq
DB search
MKTLVKFNEFGLSPELMKAVSKMGFEEATPIQAATIPLSLQNRDVIGQAQTGTGKTAAFG
IPLIEKIDMNNDAVQAIVVAPTRELAIQVSEELYKIGSTKRVRVLPIYGGQDIERQIRAL
KKHPHIIVGTPGRILDHIQRRTLRLQHVHTVVLDEADEMLNMGFVEDIEAILSHVPTERQ
TLLFSATMPEPIRRIAERFMNNPELVRVKAKEMTVPNIEQYYIEIQEKKKFDTLTRLLDI
QSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIDILVAT
DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAITFVTPREIGQLHHIEK
TTKRKMERMKPPTLDEALEGQQRAAIEKLLATIEHNNLAFYKRAAEELLEEHDSVSLVAA
CIKMLTKEPDMTPVQLTEEPPLMKKEKKRQVQTRQRRNETRSRGSKTRTKR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacattggttaaatttaacgaatttggattaagtccagaattgatgaaagcagtt
agtaaaatgggatttgaagaggcaacgccgattcaagcggccaccattccgctcagtttg
caaaatcgcgatgtcatcgggcaagcgcaaacgggaacaggaaaaacggcggcatttggc
attccgcttattgaaaaaattgatatgaacaacgatgcggtgcaagcaatcgttgttgcg
ccgacgagggaactagcgattcaagtatctgaagaactatataaaatcggttccacaaag
cgtgtgcgcgtgttgccgatttacggtggacaggatattgaacggcaaattcgtgcttta
aaaaaacacccgcacattattgttggtacgcctgggcgcattttagatcatattcaacgt
cgcacacttcgcttgcaacatgtgcatacagtcgtattagacgaagcagatgaaatgttg
aacatgggcttcgttgaagatattgaagcgattttaagccatgtgccaacagagcgtcaa
acgcttcttttttcagcgacgatgccagaaccgattcgccgcatcgctgagcgatttatg
aacaatccggaactcgttcgtgtgaaagcgaaagaaatgactgttccgaatatcgaacaa
tattatattgaaattcaagaaaagaaaaagtttgatacgttaacgcgcttgttagatatt
caatcacctgagctagcgattgttttcggaagaacgaaacgccgtgtcgatgagctagcg
gaagcactcaacttgcgcggctatgcggcggaaggcattcatggcgacttaagccaagcg
aaacgcttatctgtattgcgtaagtttaaggaaggttccatcgatattttagtcgcaaca
gatgtagcggcgcgtggtttagatatttctggtgtcacacacgtatacaatttcgatatt
ccacaagatccagaaagctatgttcatcgtattggccgaacagggcgtgctgggaaaaca
ggaatggcgattacgttcgttactccacgtgaaatcggacagttgcaccatatcgaaaaa
acgaccaagcggaaaatggaacggatgaaaccgccaacgttagatgaggcgcttgaaggg
caacagcgggcagcgattgaaaaactgcttgcgacaattgaacataacaatttggcattt
tataaacgggcggcggaggaattattagaagagcacgactctgtttcgcttgttgccgca
tgtattaaaatgttaacaaaagagccggatatgacaccggtgcagttgacagaagagcca
ccgcttatgaaaaaagagaaaaagcgacaagtacaaacgcgtcaacgtcgcaatgagacg
cgcagccgcggatcgaaaacgcgcacaaagcgatag
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