Anoxybacillus flavithermus: Aflv_1899
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Entry
Aflv_1899 CDS
T00790
Name
(GenBank) mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
afl
Anoxybacillus flavithermus
Pathway
afl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aflv_1899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afl03019
]
Aflv_1899
Messenger RNA biogenesis [BR:
afl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Aflv_1899
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
ACJ34260
UniProt:
B7GIB6
LinkDB
All DBs
Position
1880797..1882464
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AA seq
555 aa
AA seq
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MNMLKNKQVGVFALGGLGEIGKNTYGVQYEDEIIIIDAGIKFPEDELLGIDYVIPDYSYL
VKNAENIKGLFITHGHEDHIGGIPYLLRQVNVPIYGGKLALGLIRNKLEEHGLLRQTKLI
EIKEDDVISFGKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVQGRIIFATFASNIHRLQQ
VTEAAVLNNRKIAVFGRSMEAAIEIGQQLGYIKCPKDTFVDATQINRLPAHRVTILCTGS
QGEPMAALSRIANGSHRQIQIMPGDTVVFSSSPIPGNTVSVNRIINMLARAGAEVIHGPL
SDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHVKLAVDCGVPEENCFIMDNGE
VLGISEEGASIVGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEMKI
AAGPDIISRGFVYMRESGNLINDAQQLIAKHLQQLLEQGTNQWSDIKTEITDTLAPFLYE
KTKRKPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgttaaaaaataaacaagttggcgttttcgccctcggcggtctaggcgaaatc
ggaaaaaatacatatggcgtgcagtatgaagatgaaatcatcattatcgatgccggcatt
aagtttccggaagatgaattgcttggcattgattacgtcattcctgattatagctattta
gtgaaaaacgcagaaaacattaaaggattgtttattacgcacggacatgaagaccatatt
ggcggcattccgtatttacttcgtcaagtgaacgtgccaatttacggcggaaaattagcg
cttggactcattcgcaacaaattagaagagcacggattgcttcgccaaacgaaactgatc
gaaataaaagaagatgacgtcatttcgttcggaaaaactgcggtgacatttttccgaaca
acccacagcattccagacagctacggtattgtcgtcaaaacaccggtcgggcaaattgtg
catacgggcgattttaaattcgactttacgcctgttggcgagccagcaaacttaacgaag
atggctgaaatcggaaaagaaggcgtcctttgtttgttgtccgacagcacaaatagcgaa
attccgcattttacgatgtctgagcgacgcgtcggcgaaagcatccatgatattttccga
aaagtacaaggacgcatcatttttgcgacgttcgcttccaacattcaccgcttgcaacaa
gtcacggaagcggctgtattaaacaatcggaaaattgcggtgttcggacgaagcatggaa
gcggccatcgaaattggacaacaactcggctacattaaatgtccgaaagatacgttcgtt
gacgctacgcaaattaatcgccttcctgcccatcgcgtgaccattctttgcaccggaagc
caaggtgagccgatggcagcgttatcgcgcatcgccaatgggtcgcaccgtcaaattcaa
attatgccgggagatacagtcgtcttttcatcttcgccaattccgggcaataccgtaagc
gtcaatcgcatcattaacatgcttgcgcgtgcaggagcggaagtcattcatggaccgctt
agcgacattcatacgtctggtcacggcggacaagaggaacaaaaattaatgattcgcctc
atgaaaccgaaatattttatgccgattcacggtgaatatcgcatgcaaaaaatgcatgtc
aaactagctgtcgattgcggtgtaccggaagaaaattgctttattatggacaacggagag
gtgctcggcattagcgaagaaggcgcaagcatcgtcggcaaaattccgtctggctccgtc
tatattgacggaagcggcattggcgatatcggcaacattgtcttgcgcgaccgccgcatt
ttatccgaagaaggattagtcatcgtcgttgtgagcatcaacatgaaagaaatgaaaatt
gccgcgggaccagacatcatctcacgcggattcgtctacatgcgtgaatcaggcaattta
attaacgatgcacaacagcttattgcgaaacatttacaacagctgcttgaacaaggaaca
aatcaatggtcggacattaaaacagaaattaccgatacactcgcgccgtttttatacgaa
aaaacgaagcgaaaaccgatgattttaccgattattatggaagtgtaa
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