Antarcticibacterium flavum: FHG64_02375
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Entry
FHG64_02375 CDS
T06005
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
afla
Antarcticibacterium flavum
Pathway
afla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FHG64_02375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afla03019
]
FHG64_02375
03009 Ribosome biogenesis [BR:
afla03009
]
FHG64_02375
Enzymes [BR:
afla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FHG64_02375
Messenger RNA biogenesis [BR:
afla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FHG64_02375
Ribosome biogenesis [BR:
afla03009
]
Prokaryotic type
rRNA helicases
FHG64_02375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UTP25_NTPase-like
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QCY68334
UniProt:
A0A5B7WYP2
LinkDB
All DBs
Position
519267..521072
Genome browser
AA seq
601 aa
AA seq
DB search
MSKFEQLGLNPAILKAVEDMGFTSPSEVQEKAIPILLQENTDMVALAQTGTGKTAAFGFP
LIQKINADKKHTQGLILSPTRELCLQITNELKNYSKYTPGLNTVAIYGGASITDQSKQIQ
RGAQIIVATPGRMQDMINRRLVDISKIEFCILDEADEMLNMGFFEDITAILSHTPKDKHT
WLFSATMPKEVSTIAKKFMRTPVEITVGTKNQGTSNVSHEYYAVNSRDRYSALKRLADAN
PDIFSVVFCRTKRDTQKVAEQLIEDGYNAAALHGDLSQNQRDLVMKSFRSRQIQMLVATD
VAARGIDVDDITHVIHYQLPDEPEVYTHRSGRTGRAGKSGVSMVIVSKSEVRKIKSIERI
IKQPFEHKEIPDGMEICRVQLFHLANDIKNTEINHDIDPYLPSIEEVLQDFTKEELIKKV
FSVEFTRFFNYYKNSSNLNVNASAGRDDRSSGGDSTRYFINVGAKDDFDWMTLKDFLKAT
LDLGRDDVSRVDVKDSFSFFNTSSEFSDKVLSTFENFQHHGRRISVEISQDGGGRSSGRS
KSRKPRGEFKPREGAGASDGGGRRRSAKPKEGGDKSSSKGKGGSRKKNIESSVNRRKSRR
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatttgaacaattagggttgaatcctgccattcttaaagctgtcgaagatatg
ggctttacgagtccaagtgaggtacaggagaaagcaatccctattttattgcaagaaaac
accgatatggtggcacttgcccaaaccggtacagggaaaacagctgcttttggtttccca
ctaattcaaaagatcaatgcagataagaagcatacgcaaggattaatcctatctcccaca
agggaattgtgtttacaaattaccaatgagcttaaaaactattccaaatatacgccggga
ttaaataccgtggctatatatggtggcgcaagcattacagaccagtccaaacaaatccag
agaggtgctcaaatcattgtggctactccgggaaggatgcaggatatgatcaaccgccgc
ctggttgatatttcaaagattgaattttgcatccttgatgaggccgatgagatgctgaac
atgggcttctttgaagatatcactgcaattttatcgcatacaccaaaagataagcatacg
tggttattttctgccacaatgcctaaagaggtttctactatcgcaaagaaatttatgcgc
actcctgtagagatcactgttggtaccaaaaatcagggaacatcaaatgtatcccatgag
tattatgctgtgaattcaagggatagatattctgcgcttaaaaggcttgcagatgccaat
cctgatatattttcagtggttttttgtagaactaagcgtgatactcaaaaagtagcagaa
caacttattgaggatggatataatgcagcagcattacacggtgatcttagccagaaccag
cgggacctggtaatgaaaagctttagaagccgccagatccagatgcttgtggcaacagat
gttgcagcaaggggaattgacgtagatgatatcacccacgtaattcattatcaattacca
gatgaacccgaagtttatacccaccgtagcggtaggaccggccgtgccggaaaaagcggg
gtttccatggtgatcgtatcaaaaagtgaggtgaggaagatcaaaagtattgaacgcatc
ataaaacaaccatttgagcataaagaaattccagacggaatggaaatttgccgggtacag
ttgttccaccttgcaaacgatattaagaatacagagatcaatcacgatatagacccatac
cttccaagtatagaagaggttttacaggatttcaccaaagaagagcttataaagaaagtc
ttttctgttgagtttaccaggttctttaattattacaagaattcttctaatttaaacgtg
aatgcctctgcggggcgtgatgatcgttcctctggtggtgactctacaaggtacttcata
aatgtgggtgcaaaggacgattttgactggatgaccttaaaggatttccttaaggcaacc
ctggacctgggtcgtgatgatgtatcaagagtggatgttaaggatagtttttctttcttt
aataccagctctgaattttcagacaaggtactttcaacttttgagaacttccagcatcat
ggaagacgtataagcgttgagatctcccaggatggcggtggccgctcttcaggaagaagc
aaaagcaggaaacccagaggtgagtttaagccacgtgaaggtgccggtgcatctgatggt
ggaggaagacgaagaagcgccaaacctaaagaaggtggagacaaatcttcctccaaagga
aaaggcggaagccgtaaaaagaacatagaaagttctgtgaacagaagaaaatcaagaaga
tcataa
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