Antarcticibacterium flavum: FHG64_05055
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Entry
FHG64_05055 CDS
T06005
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
afla
Antarcticibacterium flavum
Brite
KEGG Orthology (KO) [BR:
afla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afla03016
]
FHG64_05055
Enzymes [BR:
afla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FHG64_05055
Transfer RNA biogenesis [BR:
afla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FHG64_05055
Prokaryotic type
tRNA splicing ligases
FHG64_05055
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Reg_prop
Motif
Other DBs
NCBI-ProteinID:
QCY68817
UniProt:
A0A5B7X0F7
LinkDB
All DBs
Position
complement(1202933..1204144)
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AA seq
403 aa
AA seq
DB search
MERLTIFGKELIDEKSITQIKNAVGPEDIAVLTADAHYGYGHPIGGAVAYKNKISLSGVG
FDIACGNKAVKTNIKASEIDVAAVMDEIFRRISFGVGRVNKEPLDHPVFEKIAKADFSPQ
RKLLDLSVEQLGTVGAGNHFVDLFEDDEGFLWLGVHFGSRGFGHKTTTGFIAMSQGKGFF
DHAKEGGMDSKPILFDVNSALGQEYIAAMNLAGEYAYAGRDVVVDKVLEILQAGKPDFEV
HNHHNFAWKEEHFGEDYWVVRKGCTPAFPGQMGFIGANMEDTSVIVKGKDSNLSRSGLYS
TVHGAGRVMSRRKAAGKTKWLRGKDGKKRPTIVSKGAVDFEAVKARLRNKVELRGAGADE
APEAYKNLDEVLSHQGETIEVLHRLHPIGVAMAGSETYDPYKD
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggagagattaacgatcttcggaaaagagctcatcgatgaaaaatcgatcacccagatc
aaaaatgctgtgggcccggaggatattgcagttctcactgccgatgcccactatggttac
gggcaccctataggtggtgctgtggcttataaaaataagatatccctctctggcgttggc
tttgatattgcctgtgggaacaaagctgtgaaaacaaatatcaaagcctcagagatagat
gtggctgcagtgatggatgagatcttcaggcgcatttcctttggtgtggggagggtgaat
aaagaaccgctggaccatcctgtatttgagaagatcgcaaaagccgatttctccccgcag
cgcaaactgcttgacctctctgtagaacaattgggaacggtaggagctggaaatcatttt
gtagacctttttgaagatgatgagggatttttgtggttaggagttcactttggctcccgg
ggatttggccataaaaccaccacaggtttcattgcaatgtcacagggaaaaggttttttt
gaccatgctaaagaaggaggcatggattcgaaaccaatattatttgacgtaaattctgct
ttgggacaggagtatattgcagctatgaacctggcgggggaatatgcctatgccggcagg
gatgtggttgtagataaagtgctggagatattgcaagcggggaaacccgatttcgaggtt
cataaccatcataattttgcctggaaagaggaacattttggggaggactactgggtggta
cggaagggatgtactcctgctttccctggacaaatgggtttcataggagccaatatggag
gatacttcggtaattgtaaagggaaaagattcgaacctctcccgcagcggactctactca
acggtccacggtgccggccgggtaatgtccaggcgaaaggcagccggaaagaccaaatgg
ctgcgggggaaagatggtaaaaaaaggcccactatagtatccaaaggagcagtggacttt
gaagctgtaaaagccaggctcaggaacaaagtagaactccgcggcgccggggcagacgaa
gcaccggaggcttataagaatctggatgaggttttaagccaccagggagaaactatagag
gtgctccatagattacaccctattggtgtcgcaatggcgggaagcgaaacttacgaccct
tataaggattga
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