Antarcticibacterium flavum: FHG64_08025
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Entry
FHG64_08025 CDS
T06005
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afla
Antarcticibacterium flavum
Pathway
afla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FHG64_08025 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afla03400
]
FHG64_08025 (mfd)
Enzymes [BR:
afla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FHG64_08025 (mfd)
DNA repair and recombination proteins [BR:
afla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FHG64_08025 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
NDUF_C2
Motif
Other DBs
NCBI-ProteinID:
QCY69344
UniProt:
A0A5B7X175
LinkDB
All DBs
Position
complement(1921757..1925182)
Genome browser
AA seq
1141 aa
AA seq
DB search
MSKTIIAQNFAQSPQQLELQKSIASSENKSQNIHLRGLVGSSLSFVVSNAFAEADAPFLL
IFNDKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKK
PALIVTYPDALFEKVVTRKELEKSTLKIALNDSLSIDFVNEILFEYKFKRVDFVTEPGEF
SVRGGIIDVFSFSNDEPYRIEFFGDEVDSIRSFDVETQLSTEQVKKISIMPNVENKKLNE
TRESFLKYVSANTVVFVKNMDLLSAQMDKLFEKAVEAFQKLPGEVKHGEPEELFCNAETF
QKQLKDFALVELGNQNILQGGGTKRKTTGEDFAGEEIISFNTKPQPSFNKQFDLLIDNLI
ENQEAGYKNFIFCVSEQQAKRFHDIFDDQDREVKYQTVVLSIYQGFIDDTAKMVCYTDHQ
IFERYHKFQLKNGYAKKQAITLKELTNLEVGDYVTHIDHGIGKFGGLQKIEVEGKMQEAI
KLIYGERDILYLSIHSLHKISKYNGKDGKPPKIYKLGSNAWKNLKQKTKARVKHIAYNLI
ELYAKRRLQKGFAFGPDSYLQHELEASFIYEDTPDQSTATEAVKLDMENERPMDRLVCGD
VGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHHKTFTERLKDFPVTVDYLNRFRTA
KERKQTLEELENGKVDIIIGTHQLVNKSVKFKDLGLLIVDEEQKFGVAVKDKLKTIKENV
DTLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPIESHVIRFSEETIRDAVMYEIQRG
GQVFFIHNRIENIKEVAGMVQRLVPDAKVAVGHGQMEGKKLEKLMLSFMNGEFDVLVSTT
IIESGLDVTNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKR
ITALEQFSELGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKEN
EFKELYSDSTNIEDKTFVKDTQIDTDFELLFPDDYINNITERLNLYTELNGIQTEEDLQK
FETRLVDRFGELPTQAVDLLNSVRIKWIASKIGLEKVVMKQGKMIGYFISDQQSDFYKTK
AFTKVLQYVQTHPHSCTMKEKKTRAGLRLLLTFEKITSVERALKVLEPLKAPSPPKGELA
K
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaccatcattgcccaaaatttcgcacagtccccgcaacagctggaactgcaa
aaatctattgcctcttctgaaaataaatcccaaaatatccaccttcgagggctggtggga
tcctctttatcttttgttgtttccaatgcttttgccgaagctgatgctccattcctgctc
atctttaacgacaaggaagaagcggcatattatctaaatgacctggaacagctgctgggt
gataagaatgttcttttctatcccggaagttaccgacggccttatcaaattgaggagaca
gataacgccaatgtgcttttacgcgcagaggttttaaaccggatcaactcccgtaagaaa
cccgcgcttatagttacctatcccgatgcgctatttgaaaaagtggtaacgcgcaaggag
ctggagaaaagcacccttaaaattgctcttaatgacagcctctccatagattttgtaaac
gaaatactcttcgaatacaagttcaaaagagttgattttgtcacagagccgggcgaattt
tcagtgaggggagggatcatagatgtcttttccttcagcaatgatgagccttacaggata
gaattctttggagatgaggtagacagcatccgcagctttgatgtggagacgcagctttct
acagagcaggtgaagaagatctccattatgcccaatgtggaaaataaaaagctgaatgaa
acccgtgaaagctttttaaagtatgtttcggccaacacagttgtgtttgtgaagaatatg
gacctgctttcagcacaaatggataaattgtttgaaaaagcagtagaagcttttcagaag
ttaccgggagaagtgaaacacggggagccggaagagcttttttgtaatgcagagacattt
cagaagcaattaaaagattttgcgctggtagaactgggaaatcagaatatcctgcagggt
gggggcaccaaacgaaaaactaccggagaggattttgccggggaagagatcatttccttt
aacaccaaaccccagccatcttttaataaacaatttgatcttttaattgacaaccttatt
gaaaaccaggaggcgggttataagaacttcatcttttgcgttagcgagcagcaggccaaa
agatttcacgacatttttgacgatcaggatcgcgaggttaaatatcaaaccgtggtgctt
tcaatataccagggttttatcgatgatacggccaaaatggtgtgttacacagatcaccag
atctttgagcgctaccataaattccagctcaagaacggctatgccaagaagcaggcgatc
actcttaaggagcttaccaatcttgaggtaggggattacgtcactcatattgaccacggg
attgggaaatttggcggactccaaaagatagaggtggaaggcaagatgcaggaggcgatc
aagcttatttacggggagcgtgatattttatacctgagtattcactccctgcacaaaatt
tcaaaatacaacggaaaggacgggaaaccgccgaagatatataaactgggcagcaacgca
tggaagaatttaaaacagaagaccaaggcccgggttaagcatattgcttacaatttaatc
gaattatacgccaagcgaaggctgcaaaaaggatttgcttttgggcctgatagttatttg
caacatgagcttgaggcttcttttatctatgaggatacaccggaccagagcacagctact
gaagcagtaaaactggacatggaaaacgagcggcctatggacaggcttgtatgcggggat
gttggcttcggaaagacagaagtggccattcgcgctgccttcaaagcggtagataacgga
aagcaggtcgctgttttagtacccactaccattctggcttttcagcatcacaagaccttt
acagaacggctgaaggattttcctgttaccgtggattatttaaaccgatttaggacagcg
aaagagcggaagcaaaccctggaagaactggagaacggaaaggtagacatcatcattggt
acccatcagctggtgaacaagtcggttaaatttaaagatttgggcttgttgatcgtggat
gaggaacagaagtttggggtagcggtaaaggataagcttaagactattaaagaaaacgtg
gatacgctcaccttaacagcaaccccaataccgcgtacactgcaattcagtttgatggct
gcgagggatcttagtacaattacgactccgccgcctaacaggtatcccattgagagccat
gtaatacgattttctgaagagaccattcgcgacgcggtgatgtatgaaattcagcgtggg
gggcaggtgttctttatacataacaggatcgagaatattaaagaagtcgccgggatggta
cagcgcctggtgccagatgccaaagtggccgtaggccatgggcaaatggaagggaagaaa
ctggagaaactcatgctttcctttatgaatggggaattcgatgtgctggtttctaccacc
attattgaaagcggattggatgttacaaacgccaacactatcttcatcaacaatgcgaat
aacttcggattatcagatctgcaccaaatgcggggccgggtaggccggagcaacaaaaaa
gccttctgctattttatcactccgccatattctgcaatgacagatgatgctcgtaagcga
atcactgctctggaacaattcagcgaactaggaagcggattcaatatcgcgatgaaggat
ctggagatacgcggagccggagatcttcttggaggagagcaaagcggctttatcaacgaa
ataggatttgatacctaccaaaagatcctgaatgaggccattgaggagctaaaggaaaat
gaattcaaggagctttacagcgatagcacaaatattgaagataagaccttcgttaaagac
acccagatcgataccgattttgaactgctgttccccgatgattacatcaacaatataacc
gagaggctaaatctctacaccgaattaaacggcatccaaactgaagaggacctgcagaaa
tttgagaccaggctggtggatcgttttggagaactgcccacacaggcggtggacctattg
aacagtgtgcgaatcaaatggatcgcttccaaaataggtctcgaaaaagtcgtgatgaaa
cagggtaaaatgataggttactttatttcagatcagcaatctgatttttacaaaaccaaa
gcctttacgaaagtgctgcaatacgtacaaacccatccgcattcctgcaccatgaaagaa
aagaaaacccgcgccgggttgaggttgttgctcacttttgaaaagataacttctgtggaa
agggcgttgaaagttttggagcctttaaaagccccctcacccccaaagggggaattagcg
aagtag
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