Antarcticibacterium flavum: FHG64_09580
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Entry
FHG64_09580 CDS
T06005
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
afla
Antarcticibacterium flavum
Pathway
afla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FHG64_09580 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afla03019
]
FHG64_09580 (rnr)
03016 Transfer RNA biogenesis [BR:
afla03016
]
FHG64_09580 (rnr)
Enzymes [BR:
afla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FHG64_09580 (rnr)
Messenger RNA biogenesis [BR:
afla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FHG64_09580 (rnr)
Transfer RNA biogenesis [BR:
afla03016
]
Prokaryotic type
tRNA degradation factors
FHG64_09580 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
S1CSD-TOTE-2
OB_RNR_1st
CSD
Rrp44_S1
RNase_3_N
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QCY69627
UniProt:
A0A5B7X2J4
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All DBs
Position
complement(2259536..2261737)
Genome browser
AA seq
733 aa
AA seq
DB search
MSKKNKNKSGAGAQGNLSKSIKDILRKSPDATFNYKQIAAKLGVEDANTRNKIIRTLAQL
AAKKEIEEAERGKFKIVANLDYYTGTLDMTTKGFGYVVVEELDDDVFIPANSLNKALDGD
EVEIYIYNRRRKRKSEGEVVRIINRKRTEFVGVLQLQQNFGFVAIQDPKMYTDIFVQKNK
ILDAQDGDKVVVTMEEWPEKADSPFGKITQVLGKPGEHHTEIHSILAQYGLPHEFPEEVE
EYANNIDTSIKEEEISKRRDLRDVLTFTIDPADAKDFDDALSFRELENGNIEIGIHIADV
SHYLEPDTILDEEAYQRATSIYLVDRVVPMLPEVLSNNACSLRPNEEKYTFSAIFELDSK
GHVKQQWFGRTVTNSNVRFAYEEAQHIIETQKGFIPQEVSIQEREYTVEDDVVNAVVKLN
SLAQKMRSRRLREGSISFDKVEVKFQLNEENEPTGVYFKTSEDANKLIEEFMLLANRKVA
EFIGKKSPKKTFVYRCHDEPDESKLAALQTVVSKFGYKINLKDRKSVTSSLNSLLSDVQG
KKEQNLVDTLTIRTMSKAYYSTENIGHYGLAFDYYSHFTSPIRRYPDVMTHRLLQRYLDD
EKSAIEEEYEEKCRHSSNMESLATSAERDSIKYMQVKFMIDHQDEEFLGVISGVTEWGIY
VEIIENKCEGMVRLRDIKDDHYEFDEEQYAIIGKKTQKKYTLGDEVYVKVKNADLVKKHL
DFTLIGKESQGNN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaagaataagaataaaagtggtgcaggagcccagggaaatttatcaaaaagt
attaaagatatcctgaggaaatccccggatgctacttttaactataaacaaatagcagcc
aaactgggagttgaagatgccaatacccgtaataagatcattcgcactcttgcacagctg
gcagcaaaaaaggaaattgaagaagcagaaaggggaaaatttaaaattgtagccaattta
gattattacaccggtaccctggatatgaccacaaaaggttttggttatgttgtggttgag
gaactggatgatgatgtattcattcctgccaattcccttaataaagctcttgatggcgat
gaagtagaaatttatatctataatcgcaggagaaagagaaaatctgaaggagaagttgta
aggatcataaataggaaacgcactgaatttgttggagttcttcaattacagcaaaatttt
ggattcgtagcaatacaggatcctaagatgtatacagatatatttgttcaaaagaacaag
atcctcgatgcccaggatggagataaagtagtagttactatggaagaatggcccgaaaaa
gccgattctccttttggaaaaataacccaggttttaggaaaaccgggagagcatcataca
gaaattcattctattcttgcacaatatggccttcctcatgaattcccagaggaggtagaa
gagtatgctaataacattgatacttccataaaggaagaagaaataagcaaaagaagggac
ttaagggatgtgctaactttcacaatagatcctgcagatgccaaggattttgacgatgct
ttgagctttagggaattggaaaacggcaatattgagattgggattcatatagccgatgtt
tcgcattacctcgaaccagatactatcctggatgaagaagcttatcaaagggctacttcc
atatatcttgtagatagggtagtacctatgttgcctgaagtcctttccaataatgcctgt
tctttgcgcccgaatgaagaaaaatataccttctctgctatttttgaactggattcaaaa
ggacatgttaagcagcaatggtttggaaggacagttaccaattcaaatgtacgtttcgcc
tacgaggaagcacaacatatcatagaaacgcagaaaggttttattccgcaggaggtttct
atacaggagcgggaatatacggtagaggacgatgttgtaaatgctgtggttaaacttaat
tcccttgcgcaaaaaatgaggtctaggagacttcgggaaggttctatttcatttgacaag
gtggaggtgaaatttcagctaaatgaggaaaacgaacctacaggagtttattttaagact
tcagaggatgcaaataaacttatagaggaattcatgcttctggcaaaccgaaaggttgct
gaattcattggaaaaaaatcgcctaaaaaaacatttgtctatcgttgtcatgatgaaccc
gatgaatccaagcttgctgccttacaaactgtggtatctaaatttggttataagatcaac
ctaaaggatagaaaatctgtaacctcttcccttaacagtcttcttagcgatgtacaggga
aaaaaagaacagaaccttgtagatacacttacaatacgtacaatgagcaaagcttattac
agtacagagaatataggacattatggccttgcatttgattactattcacattttacctcg
ccaatacgccgttatccagatgttatgacccacaggttgttgcaaaggtatctcgatgat
gaaaaatcggctatagaggaagaatatgaggaaaaatgcaggcatagcagcaatatggaa
agtcttgccacaagtgcagagagggattccattaagtatatgcaggtcaaatttatgata
gatcaccaggacgaggaattccttggagtaatctcaggggtgacagagtggggaatctat
gtagagatcattgagaacaaatgtgagggaatggtgagacttcgtgatattaaagatgat
cattatgaatttgatgaggaacaatacgcaataattggtaaaaaaacccaaaagaaatat
acattgggagacgaggtgtatgttaaggtcaaaaatgccgacttagtgaaaaagcatctt
gattttacacttattggaaaagaaagccagggcaataattaa
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