Antarcticibacterium flavum: FHG64_13420
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Entry
FHG64_13420 CDS
T06005
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
afla
Antarcticibacterium flavum
Pathway
afla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FHG64_13420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afla03019
]
FHG64_13420
03016 Transfer RNA biogenesis [BR:
afla03016
]
FHG64_13420
Enzymes [BR:
afla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FHG64_13420
Messenger RNA biogenesis [BR:
afla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FHG64_13420
Transfer RNA biogenesis [BR:
afla03016
]
Prokaryotic type
tRNA degradation factors
FHG64_13420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
MOEP19
KH-I_KHDC4-BBP
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
QCY70323
UniProt:
A0A5B7X6S1
LinkDB
All DBs
Position
complement(3100994..3103237)
Genome browser
AA seq
747 aa
AA seq
DB search
MIPKTFKEVIDLGDGRTITLETGKLAKQAHGSVVVQMGDAMLLCTVVSSYKESTMDFFPL
TVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRIVDRVLRPLFPSDYKTETQVMIQLMS
HDEEVMPDALAGLAASAAIQLSDVPFECAISEARVGRVNGEFIINPSRSQLLESDLDMII
GASADSVMMVEGEMKEISEEEMAEAIKFAHEAIKEQIKAQERLVEAVGRKPVREYEPAKK
DESIQQKIHDTAYQKIYDIAKGGHGKRERSEAFAAVKEEVLALFTEEELEENRDLIKSYF
SKTEKEAVRELTLAEGLRLDGRKTDEIRPIWCEIDYLPSVHGSAIFTRGETQALATVTLG
TSREANMIDMPTHQGEETFYLHYNFPPFSTGEAYPIRGTSRREIGHGNLAQRALKGMIPA
DNPYTVRIVSEVLESNGSSSMATVCAGTMAMMDAGIQMKKPVSGIAMGLISDGDRHAVLS
DILGDEDHLGDMDFKVTGTTDGITACQMDIKVKGLPYEILVKALKQARAGRLHILEKLTE
AIAQPNEGVKAHAPKIVTREIPQEFIGALIGPGGKVIQEMQKTSGTTIVINEVDEKGIVE
ILGTSQEGIDSVLAKIDSLLFKPEVGETYDVKVIKMLDFGAVVEFLVAPGNEVLLHVSEL
AWERTENVSDVVNMGDEFKVKYFGIDPKTRKQKVSRKALLPKPEGYQARPPRDNNDRGRD
NRGSRDNRGRDDRGRDDRRSRDNRNND
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaagacatttaaagaggttatcgatctaggcgatggcaggaccatcaccctc
gaaaccggaaaattggcaaaacaagcccatggctctgttgttgttcaaatgggagacgca
atgctcctttgtacagttgtttcctcttacaaggaaagcactatggatttctttccatta
actgtagattaccgtgaaaaatttgctgcggcaggacgttacccgggcggtttcttcaag
agagaagcaaggccaagtgacggggaagtattaacaatgaggatcgtagacagggtgcta
cgtccacttttcccatcagattataagacagagacccaggtaatgatccagttgatgtct
catgatgaagaggtgatgccggatgcccttgcaggattggcagcatctgcagctatacag
ctttcagatgttccttttgagtgtgctatttctgaagcacgcgttggtagggtaaacggt
gagttcatcatcaacccaagccgaagccagctattggaatcagaccttgatatgatcatt
ggtgcctctgcagactctgtaatgatggtggaaggtgagatgaaagagatttcagaagaa
gaaatggcagaagctattaaatttgcccatgaagctatcaaagaacagatcaaagcccag
gaacgcctcgtggaagctgttggaagaaagccggtgagagaatatgagcctgcaaagaag
gacgaatccattcagcaaaaaattcatgatactgcttatcaaaagatctatgatattgct
aagggtggacacggaaaaagagaaagaagcgaagcatttgcagcagtaaaagaagaagta
cttgcattgtttactgaagaagaactggaagaaaacagggatcttatcaaatcttatttc
agcaaaactgaaaaggaggcggtaagggaacttaccctggctgaaggtcttagactggac
ggaagaaaaacagatgaaattcgcccaatatggtgtgagatagattatctgccatctgtc
catggttctgcgatcttcacaagaggagaaacccaggcgcttgcaacagtgacccttgga
acttccagagaagcaaatatgatagatatgccaacccaccagggcgaggaaactttctat
ctacattataacttccctccattctcaacaggggaagcatacccaattagagggacttca
agacgtgagattggtcacgggaaccttgcacaacgtgcactaaaaggaatgatccctgca
gacaatccatatactgtgagaatagtttctgaagtattggaatccaatggatcttcttct
atggcaacggtttgtgccggtacaatggcaatgatggacgccgggatccaaatgaagaaa
ccggtatccgggatcgcaatgggattgatctctgatggggaccgccacgcggtattatca
gatattcttggagatgaagatcaccttggagatatggactttaaagtaaccggaactaca
gatggaattactgcctgccagatggacattaaagttaaaggattaccttatgagatcctt
gtaaaagcccttaaacaggcgcgtgcaggaagacttcatattttagagaaacttacagag
gcaattgcccagccaaatgaaggtgtgaaagctcacgctccaaagatcgttaccagagag
atcccacaggaattcattggtgcgcttattggaccaggtggaaaagtgatccaggaaatg
caaaaaacttccgggaccactatcgtgatcaatgaggtagatgaaaaaggaattgttgag
atccttggaacgagccaggaaggtattgacagtgttcttgcaaaaatagattctttgcta
tttaagcctgaagttggagaaacctatgatgtgaaagtcataaagatgcttgattttggt
gctgtggtagaattccttgttgccccgggtaatgaagtattgcttcacgtatctgaactt
gcgtgggaacgtacagagaatgtaagcgatgtggttaatatgggagatgaatttaaagta
aaatactttggaattgatcctaagacccgtaagcaaaaagtttcaagaaaagcgctttta
cctaaaccggaaggttaccaggcaaggccgccaagagacaacaatgaccgtggtcgtgat
aaccgtggttcaagagacaacagaggccgtgacgatagaggtcgtgatgacagaaggtcc
agagacaacaggaataacgactaa
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