Aphanizomenon flos-aquae: HEQ12_00485
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Entry
HEQ12_00485 CDS
T07103
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aflo
Aphanizomenon flos-aquae
Pathway
aflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEQ12_00485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aflo03019
]
HEQ12_00485
Enzymes [BR:
aflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HEQ12_00485
Messenger RNA biogenesis [BR:
aflo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HEQ12_00485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HI1480
AAA_19
FANCF
DUF7428
Motif
Other DBs
NCBI-ProteinID:
QSV65597
LinkDB
All DBs
Position
complement(108436..109779)
Genome browser
AA seq
447 aa
AA seq
DB search
MSFSNLGLSPEIIRAVTELGYNQPTPIQKQAIPVVLAGGDIMAGAQTGTGKTASFTLPLL
HRLSANKSISSNSQGFSPIRALILTPTRELAAQVQESVRDYGKYLDLNSMVMFGGVSIGP
QKQKLRTRIDILVSTPGRLLDHVLQGTVNLSRVEVLVLDEADRMLDMGFINDIRRILALL
PKQRQNLLFFATFSDKVKILAAGLLNNPTMIEVARRNVTAATVSQKVYHVDRDRKRQLLS
HLIRENKWYQVLVFSRTKYGADRLVKQLGEDRIQALAIHGNKSQGARTHALTKFKDGTLQ
VLVATDIAARGLDISELPHVINYDLPNVPEDYVHRIGRTGRAGAEGQAISLVCVDEHHLL
ADIEQLIEQRLPKEVVAGFGVNPEIKAEPIPNGRKAPAGGGGNQRTRRSAPKSASQKSPK
QPSSRTAAGDKKSIPGSPTPRRSGKRR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctaatctcggcttgtcccctgaaattatccgtgctgttacggagctagga
tataatcaacctacaccaatccagaaacaggctattcctgtggtattggctgggggtgat
attatggctggagcgcaaactggtactggtaaaaccgccagcttcactctaccattgtta
catcgtttgtctgcaaataagagtatttccagcaattctcagggattttccccaattcgg
gctttaattctcactcctactcgtgaactcgctgcacaggtacaagaaagcgtccgtgat
tatggtaaatacttagatctgaattcaatggtgatgtttgggggggtgagtattggtccc
caaaaacagaaattgagaacccggatagatattttggtttccacccccggaagactgcta
gatcatgttctacaagggactgtgaacttgtcccgtgtagaagtgttggtactggatgaa
gcagatcgaatgctggatatgggttttattaatgatatccgccgtattctggcactttta
ccaaaacaacgccagaatttgctattttttgcgactttctcggataaagttaaaatcctg
gccgctgggttactaaataatccgacaatgattgaagtggcacgtcggaatgtaactgcg
gctacggtatcacagaaagtttatcatgtggaccgcgatcgcaaacggcaattactttct
catctgattcgggaaaataaatggtatcaagtattggtgtttagccgcactaaatatggt
gctgaccgcttagttaagcagttaggtgaagaccgtattcaagctttagctattcacggg
aataagagtcaaggagcacgaactcacgctttaactaagtttaaagatgggactttgcag
gtattagtagcaacggatattgctgcgcgtggtcttgatattagtgaattacctcacgtt
attaattacgatttaccgaatgttccagaggattatgtacatcgtattggtcggactgga
cgcgctggtgcggaaggtcaagcgatttcccttgtatgtgttgatgaacatcatttatta
gcggatattgagcaactaattgagcagcgtttacctaaggaagtggtggctggttttgga
gtcaacccggaaattaaggccgaaccaattcccaatggacgcaaagctcctgctggtggt
ggtggaaatcagcgaactcgtcgttctgctcctaaatctgcttctcaaaagtcgcctaaa
cagccttcttcacgcacagcagcgggtgataaaaagtctattcctggttcaccgacacca
cgtcgttctggtaaacgtaggtaa
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