Aphanizomenon flos-aquae: HEQ12_02890
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Entry
HEQ12_02890 CDS
T07103
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aflo
Aphanizomenon flos-aquae
Pathway
aflo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aflo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HEQ12_02890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aflo03021
]
HEQ12_02890
03400 DNA repair and recombination proteins [BR:
aflo03400
]
HEQ12_02890
Enzymes [BR:
aflo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HEQ12_02890
Transcription machinery [BR:
aflo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HEQ12_02890
DNA repair and recombination proteins [BR:
aflo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HEQ12_02890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
QSV66006
LinkDB
All DBs
Position
complement(630918..632810)
Genome browser
AA seq
630 aa
AA seq
DB search
MRSPQSNQFDYVKIGIASPERIRQWGERTLPNGQLVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVAHVWYLKG
IPSYIAILLDMPLRDVEQIVYFNSYCVLAAGNADTLSYKQLLSEDQWLEIEDAIYSEDSQ
LEGVEVGIGAEALLRLLADIKLEEEAETLREEIEKAKGQKRAKLIKRLRVIDNFIATGSQ
PQWMVMEIIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPNLRIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRGDPSVWDVLE
EVIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGKPIVTPSQDMVLGAYYLTAENPKATLGAGKYFSSLDD
VIMAYEAKQVELHAYIYVRFDGEVDSGVPDSEPIEVIEDRDGLGNLRGRTLIYKFRRVRE
DGQGNLLSQYIYTTPGRAIYNKAIQEAIDA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgagatctccccaatctaatcagtttgactacgtaaaaattggtattgcttcacccgaa
cggattcgccagtggggtgaacgtaccttacccaatggccagttagtgggtgaggtaaca
aaaccagaaacaattaattaccggaccctaaagccggagatggatggtttattttgtgaa
cgcatatttggacccgcgaaagattgggaatgtcattgtggtaaatacaaacgcgttcgc
catagaggcattgtttgtgagcgctgtggagtagaagtaacagagtctcgtgtccgtcgt
caccgaatgggctttattaaactagctgctcccgtagctcatgtttggtacttgaaaggg
attcctagttatattgcgattctcttagatatgcccttgcgagacgtagagcaaattgtt
tatttcaactcttattgtgttttagctgctggcaatgcagataccttgagttataaacaa
ttactgagtgaagaccagtggttagaaattgaagatgccatctacagtgaagattctcag
ttagagggtgtagaagtaggtattggggctgaagcgctcttgcgactgttagcggatatt
aaattagaagaagaagcagaaaccttacgggaagagattgagaaagctaaaggtcaaaaa
cgggcaaaattgattaaacggttgcgagtgattgataatttcattgccactgggtcacaa
ccacaatggatggtcatggagattattcccgtaattccccctgatttgcgtccaatggtg
caattggatggggggaggtttgcgaccagtgacttaaatgatttgtatcggcgggtgatt
aaccggaacaatcgtttagctaggctgcaagagattctagcgcccgagatcattgtgcgg
aatgaaaaacggatgttgcaagaagccgtggacgcgctgatagataatgggcgacggggt
aggacagtggtaggtgctaataaccgtccactgaagtccttgtcggatattattgaggga
aaacagggacgatttcgacagaatttgttaggtaaacgggtggattattcaggacggtcc
gtgattgtggtaggtccgaatttgaggattcatcaatgtggattaccgagggagatggct
attgagttatttcagccttttgtgattaatcgcttgattcggtcggggatggtgaataac
atcaaagcggcgaagaaattgatttctcgtggtgatccgagtgtttgggatgtgttggag
gaggtgattgaggggcatccagtgatgttgaaccgagcgccgaccttgcaccgtttaggg
attcaggcttttgagccgattttggtggagggtagggcgattcaactgcatcctttagtt
tgtccggcctttaatgctgattttgatggtgaccagatggcggttcatgtgcctttgtct
ttagagagtcaggcggaggcgcggttgttgatgttggcttctaataatattctgtcgccg
gcgactggtaagccgattgtgacaccgagtcaggatatggtgttgggggcgtattattta
acggcggaaaaccctaaagcgaccttgggagccgggaagtatttctcgtctttggatgat
gtgattatggcttatgaggcgaagcaggtggagttgcacgcgtatatttatgtgcgtttt
gatggtgaggtagattcgggtgtgccggattctgagccgatagaggttattgaggatagg
gatgggttgggtaatttaaggggtcgaactttgatttataagttccggcgtgtgcgggag
gatggtcagggaaatttactttctcagtacatttatacgactcctgggcgagcgatttat
aataaggcgattcaagaggctatagatgcgtaa
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