Aphanizomenon flos-aquae: HEQ12_03185
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Entry
HEQ12_03185 CDS
T07103
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aflo
Aphanizomenon flos-aquae
Brite
KEGG Orthology (KO) [BR:
aflo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HEQ12_03185 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aflo03021
]
HEQ12_03185 (rpoD)
Transcription machinery [BR:
aflo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HEQ12_03185 (rpoD)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QSV66054
LinkDB
All DBs
Position
complement(706228..707400)
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AA seq
390 aa
AA seq
DB search
MNQANNVLDNIYQPDLEMINPPEIELQALLIEEEDLLLTDDGEINDFLEPQSDEDDAESG
KAAKSRRRTQVTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLELERARERL
CERLEREPRDSEWAAEVSLPLPTFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF
QDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETIS
RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD
FIESDGETPEDQVSKNLLREDLEKVLDSLGPRERDVLRLRYGLDDGRMKTLEEIGQIFNV
TRERIRQIEAKALRKLRHPNRNSVLKEYIR
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggctaacaacgtactcgataatatttatcagcctgacctagaaatgataaat
ccgcctgagatcgaattacaagcgctcttaatagaagaagaggacttattgctgactgat
gacggcgaaattaatgattttttagagcctcagtctgatgaggacgacgcagagtctgga
aaagccgctaaatcgcgtcgtcggacacaagtaaccaagaaaaagcattacaccgaagat
tccattcgtctgtacttgcaagagattgggaggattcgtctattacgcgcagatgaagaa
attgaactggcgcggaaaattgctgagttactggaactagaacgggcaagggaaaggctt
tgtgaacgcctggaacgagagcctagagacagtgaatgggcggcagaagtatcattacca
ttaccaacctttcgttatcgcctacacattggccgcagggcgaaggacaagatggtacaa
tctaacctgcggctggtagtttccattgccaagaagtacatgaatcggggcttgtctttc
caagacttgattcaagagggtagtttggggttgattcgtgcggctgaaaagtttgatcac
gaaaaaggctataagttttctacctacgctacatggtggatacgtcaagcaattaccaga
gcgatcgctgaccagtcccgcactatccgtctaccggttcatctttacgaaaccatttcc
cgaattaagaaaactacgaaactcctgtctcaagaaatgggacgtaaacccacggaggaa
gaaattgcgactcgcatggaaatgaccatcgagaaactgcggtttattgccaaatctgct
caattaccaatttctctggaaacaccgatagggaaagaagaagactcccgtttaggtgat
ttcatagaatctgacggtgaaaccccagaagaccaagtttctaaaaacttgctgcgggaa
gacctagaaaaagtcctagatagtctcggacctcgtgaacgggacgttctccgattacgc
tatggtttagacgatggtcgcatgaaaaccctagaagaaatcggccaaatttttaacgtc
acccgcgaacgtattcgccaaattgaagccaaagcactccgtaagttacgccaccctaat
cgtaacagcgtactgaaagagtatattcgttaa
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