Aphanizomenon flos-aquae: HEQ12_03810
Help
Entry
HEQ12_03810 CDS
T07103
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aflo
Aphanizomenon flos-aquae
Pathway
aflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEQ12_03810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aflo03019
]
HEQ12_03810
03009 Ribosome biogenesis [BR:
aflo03009
]
HEQ12_03810
Enzymes [BR:
aflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HEQ12_03810
Messenger RNA biogenesis [BR:
aflo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HEQ12_03810
Ribosome biogenesis [BR:
aflo03009
]
Prokaryotic type
rRNA helicases
HEQ12_03810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
QSV66160
LinkDB
All DBs
Position
complement(833908..835467)
Genome browser
AA seq
519 aa
AA seq
DB search
MNLSFQELGISQERAELLENMGFSAPTNIQTQAIPQLLNGRDVVGQSQTGTGKTAAFSLP
ILERLDPNLKAVQAIVLTPTRELAIQVHAAISQFIGNSYLKAAAIYGGQSIDRQIMQLRR
GAQIVVGTPGRVIDLLDRGNLNLDQVRWFVLDEADEMLSMGFIDDVERILSQAPEERQTA
LFSATMPPSIRMLVNKFLNSPVTVTVEQPKAAPNKINQVAYIIPRHWTKAKALQPILEME
DPETALIFVRTRRTAAELTSQLQSAGHSVDEYHGDLSQQARERLLIRFRNRQVRWVVATD
IAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQSFERRKQQAFERH
NRQTWQILSIPTKAQIEAQHIQKLRGQVAEALTGERLASFLPIISEMIEEYDAHAIAAAA
LQIAYDQTRPAWLLSGVDLPVEESPTPKPRINKRGDGGERERSSGGGRGGRSSWSKEGKG
NEERRSSGGGSPKPKLKITHNESSPNPSNHKLGLPTGRE
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatcatttcaagaattaggcatttcccaagaacgggctgaactgttagaaaac
atgggtttttctgcacctacaaatattcaaacccaggcaattcctcaactattaaatggt
cgagatgtagttggtcagtcccaaacaggaacgggtaaaaccgcagctttttctctacca
attttagaaaggctagatcctaatttaaaagctgtacaagcaatagttttaaccccaact
cgtgagttagcaattcaagttcatgcggctatttcccaatttattggtaatagttacttg
aaagcggcggctatttatggtggtcaatcaattgaccgacaaattatgcaactcagacgt
ggggcgcaaatcgtcgtgggtacaccaggacgggtaatagatctactggatcgtggtaac
ttgaacttagaccaggttagatggtttgttttagatgaagctgatgaaatgttaagtatg
ggcttcattgacgatgtagaaagaattctttctcaagccccagaagaacgccaaacagcc
ttattctcagctacaatgccaccgtcaattcggatgttggtaaataaatttttgaattca
ccggtgactgtcaccgttgaacaacctaaagccgcaccgaataaaatcaatcaggtcgct
tacataattccccgtcattggacaaaagctaaagctttacaaccaattttggaaatggaa
gatccagaaacggctttaatctttgttcgtacccgacgcacagccgcagaattaaccagt
caattgcagtctgctggtcatagtgtggatgaatatcatggtgatttgtcccaacaagcg
cgggaacgtctattaatccgttttcgtaaccgtcaagtacgttgggtagtagctactgat
attgcagctagaggtttagatgttgatcaactttctcatgtgatcaactttgatttacct
gatagtgtagaaacctatgtacaccgaattggtcggactggtcgggctggaaaagaagga
acagcaatttccttagtccaatcctttgaacgccgcaaacaacaggcttttgaacgtcac
aaccgccaaacttggcaaattctatctattcctactaaagcgcagattgaagcccaacat
atccaaaagttacggggacaagtagccgaggctttaactggtgaacggttagcttccttc
ttgcctattatcagcgaaatgattgaggaatatgatgctcatgcgatcgctgcggctgct
ttacaaatcgcctacgatcaaacccgtcccgcttggttattatcaggtgtagacctgccc
gttgaggaaagcccaactcccaaaccaagaattaacaaacgcggtgatggtggagaacgg
gaacgcagttctggaggtggtcgcggtggtcgttcttcttggtcaaaggaaggtaagggc
aatgaggaaagacgtagtagcggtggaggtagtcctaaacccaagttgaaaataactcac
aatgagtcttctcctaatcctagcaatcacaagttaggtttacctacaggtagagaatag
DBGET
integrated database retrieval system
