Aphanizomenon flos-aquae: HEQ12_13165
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Entry
HEQ12_13165 CDS
T07103
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aflo
Aphanizomenon flos-aquae
Pathway
aflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEQ12_13165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aflo03019
]
HEQ12_13165
03016 Transfer RNA biogenesis [BR:
aflo03016
]
HEQ12_13165
Enzymes [BR:
aflo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HEQ12_13165
Messenger RNA biogenesis [BR:
aflo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HEQ12_13165
Transfer RNA biogenesis [BR:
aflo03016
]
Prokaryotic type
tRNA degradation factors
HEQ12_13165
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
PRANC
Motif
Other DBs
NCBI-ProteinID:
QSV67772
LinkDB
All DBs
Position
2900879..2903215
Genome browser
AA seq
778 aa
AA seq
DB search
MEFSIATLLANFTDDKLVARKVLEKKLGCENEESLEKLQITLDVLEKIGLLVKERGKYRR
VTEEGLIEAKLRCSSKGFCFAIQDSEGSEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRS
PEGEVKLIMERSNHTLLARIKQVEEGFRAVPLDDRLLFELKLQLNSMNLEEAIDHLAHVE
ILRYPLAQYPPLGRVVQILGSDAEAAADIDLVTCKHDLSRTFPDAILDVATKLPKRLLKA
DLKNRLDLRDIFTFTIKSVNSDESVVENAWSLEKTTADNWRLIVHITDVSHYIQPDEALD
REALKRGKSVYLGESLLPMLPAAVTERCSLIPGSDRLALSFIITINPQSGEVEEWEIQPS
VISVDTSVSQTNAVSILTGKTTKVTAEVQEKLLDLQTLAMAIKQVRLERGSLQLNLPPTH
NPYHDEGSMGSVVLNDLPPASLITELVILVNQLMANHLNALDIPCLWRVQGTPDPEDVQE
MLKLAVNLGVELGLDPELEIQPLDYQHLTGAFTESPSEQVLTYLLQDTLKPSVYSVTKSS
HFGLALSQYVHITAPLRRYPDILLQRVYHNLIEHGRDRRNTRVKERINLRHSNCHEEINW
NVLPPELQQEIQSDLTRVVVQINDREKEVQEAEADLAGLQKASLMKQRIGEIFPGVITGV
QSYGFFVEIEVPVEAPIRGNLANTLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASYR
LGDSCMVQVKSVDYYRQQIDLVTVGADGLPKSMGANINNEDLGDIYSPNETDSFDQEP
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacacttcttgccaattttacagatgataaattggtagctcgt
aaagtcctagaaaaaaaactgggttgtgagaatgaggaaagtctagaaaaactacaaatt
actttagatgtactggaaaaaattgggcttttggtgaaggaacggggaaaatatcgccgc
gtcaccgaggaggggttaattgaggctaaactacgctgttccagcaagggcttttgcttt
gcaattcaagatagcgaaggctcagaggatatttacatccgtgaaagtcatttgagtaat
gcctggaatggcgatcgcgttttagttagagtcctcaaggaaggcagtcgacggcgatcg
cccgaaggtgaagttaaattgatcatggaacggtctaatcacaccttactcgccagaatt
aagcaggtagaggaaggttttcgggctgtacccttagatgacagattgctgtttgaacta
aaactacaactcaacagcatgaatctggaagaggcaattgatcatttagctcatgtagaa
attctccgttatcccttggcacaatatccccccttgggtcgagtggtgcaaattctgggc
agtgatgctgaagccgcagcagatatagatttggtaacttgtaaacatgatttatcccga
acttttcctgatgcaatcctcgatgtcgccacaaagttacccaaaagactcctgaaagca
gacctgaaaaatcgtctcgatttacgtgatatttttaccttcacgatcaaaagtgtcaac
agtgatgaatctgtggtggaaaatgcctggagtttggaaaaaactaccgctgataattgg
cgattaattgttcacattacggatgtgtcccactatatccaaccagatgaagccttagat
agggaagccctgaagcgcggtaaatcagtatatttaggagaatccttactgccaatgtta
ccagcagcggtgacagaacggtgttctctgatccctggtagcgatcgcttggctctttcc
tttatcattaccattaacccccaatcgggagaagtggaggaatgggaaattcaacctagt
gtcattagtgtagatacatctgtaagtcaaacaaatgcagtcagcattctcacaggtaaa
accaccaaagtgacagccgaagttcaagagaaactgctagatttgcagactttggctatg
gctattaaacaggtacgtttagagcggggtagtttacagttaaatctcccacccactcat
aacccttaccatgatgaaggatcaatgggatctgtggtactaaatgacttaccaccagcg
tcgctgatcacagagttggtaatattagttaaccaactcatggccaaccacctcaacgct
ctagacattccttgtctatggcgagtccaaggtacacctgaccccgaagatgttcaggaa
atgctcaaactagctgtgaatttaggtgtggaattaggactagacccagaattggaaatc
caacccctagattatcaacacttgacaggagcttttaccgaatctccatcggaacaagtt
ctcacttacttgttacaggacactcttaagccctctgtctacagcgtcaccaagagttct
cactttggactggccttatctcaatatgtccacatcaccgcccccctccgtcgttatcca
gatatcctcttacaacgggtgtatcataacttaatagaacatgggcgcgatcgccggaat
acccgcgtcaaagaacgaattaatctccgccattccaattgtcatgaagaaattaattgg
aacgttcttcccccagaactccaacaagaaatccaaagtgacttaactagagttgttgtt
cagattaatgaccgagaaaaagaagtccaagaagcagaagctgatttagccggactgcaa
aaagcctccttgatgaaacaacgcattggcgaaatatttcccggagtaattactggtgtt
caatcctatggtttttttgtagaaatcgaagtcccagtagaagcaccgatccggggcaat
ctcgccaataccttacgggtagaagggctagttcacgtcagttccctcaaagatgattgg
tatgaatatcgggctagacaacaagctttatttgggcggaaaaatcgagcttcctaccga
ctcggtgatagctgcatggtgcaagtcaagagtgttgattattaccgtcaacaaattgat
ttagttaccgttggcgcagatggtttacctaaaagcatgggcgcaaatataaataatgaa
gatctaggagacatttattcacccaatgaaaccgactctttcgaccaagaaccataa
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