Aphanizomenon flos-aquae: HEQ12_15740
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Entry
HEQ12_15740 CDS
T07103
Name
(GenBank) RNA polymerase sigma factor, RpoD/SigA family
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
aflo
Aphanizomenon flos-aquae
Brite
KEGG Orthology (KO) [BR:
aflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aflo03021
]
HEQ12_15740
Transcription machinery [BR:
aflo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HEQ12_15740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
LexA_DNA_bind
HTH_Mga
HTH_25
Motif
Other DBs
NCBI-ProteinID:
QSV68223
LinkDB
All DBs
Position
complement(3490649..3491605)
Genome browser
AA seq
318 aa
AA seq
DB search
MKTAQTATDLVRTYLREIGRVPLLTHEEEIFYGKQVQRSTALHEIREGLATQLGHEPSIE
EWAAASNLEVPELNRAISVGEIAKRKMVEANLRLVVSIAKKYIKRNVDLLDLIQEGSIGM
QRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQ
ALGRAPTVAELSQELDLTPKQVREYLEKARLPLSLDLRLGDNYDTELGEMLEDPGATPED
FVMQTSLSYDLERMMSELTPQQQEVISLRFGLADGQSLTLAKIGEVLNISRERVRQIERE
ALSKLRKSKATMNEYLVS
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccgctcaaacagccaccgacctcgtgcggacttacctgcgtgagataggccgt
gtgccactcctcacccacgaagaagagattttttatggtaaacaggtacaaagatctact
gctttgcatgagatccgggaaggtcttgctacccaattgggtcatgaacccagtatagaa
gaatgggccgcagcctctaatttagaagtgccagaattaaatagagcaatctctgttggt
gaaatagccaaacgaaaaatggtagaagctaatctccgtttagtcgtttctattgccaaa
aagtacattaaacgcaatgttgacttacttgatctcattcaagaaggtagtattggtatg
caaagaggtgtagaaaaatttgacccgaccaagggttacagattttctacctatgcttat
tggtggatacgtcaagctattaccagagcgatagcggaaaaagcccgaactatccgcttg
cctattcatattaccgaaaaactcaacaaaattaaaaaagctcaacgtcaactatcccag
gctctaggacgtgcacccacagtcgcggaattatcccaagaattagatctaacacccaaa
caggtgcgagagtatctagaaaaagcccgtctaccactatctctagatttacgtctagga
gataattacgatactgaactgggggaaatgctagaagatccaggagcaacaccagaagat
tttgtcatgcaaacttctctatcttatgacttagagcggatgatgtcagaactcaccccc
caacaacaggaagtcattagtctacgctttgggttagcagatggacaatccttaactttg
gctaaaattggtgaagtcctgaatattagccgagaacgagtccgtcaaattgaacgtgaa
gctttaagcaaacttcgcaaatcaaaagctactatgaatgaatatcttgtcagttag
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