Apis florea (little honeybee): 100869646
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Entry
100869646 CDS
T09140
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aflr
Apis florea (little honeybee)
Pathway
aflr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aflr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100869646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aflr03019
]
100869646
03041 Spliceosome [BR:
aflr03041
]
100869646
03009 Ribosome biogenesis [BR:
aflr03009
]
100869646
03016 Transfer RNA biogenesis [BR:
aflr03016
]
100869646
Enzymes [BR:
aflr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100869646
Messenger RNA biogenesis [BR:
aflr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100869646
Spliceosome [BR:
aflr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100869646
Complex C
U4/U6.U5 tri-SnRNP related factors
100869646
Ribosome biogenesis [BR:
aflr03009
]
Eukaryotic type
Pre-60S particles
Helicases
100869646
Transfer RNA biogenesis [BR:
aflr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100869646
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Death_3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
100869646
NCBI-ProteinID:
XP_003697078
LinkDB
All DBs
Position
Unknown
AA seq
1022 aa
AA seq
DB search
MANFTEDLFDVFEEAEDIVEVIPTPVKPRNEDLNTSFNEKKTNLESGTKREFENDSDELV
SKKLRSDPVLEDLNIEELAPRIKIHTIETIESCTHEVAVPPDYEYVPLESKQSKPAKEYK
FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQ
KYREFFEEFKDVGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYM
RDKERGVVWEETLILLPDNVHYVFLSATIPNARQFVEWVAHLHKQPCHVVYTDYRPTPLQ
HYIFPVGGDGIHLVVDEMGQFKEENFNRAMACLQHSDAAKGDSKGRKGGIRPSNAGQTNI
FKMVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDLNTLEEKKLVDEVFNNAMDVLNEE
DRRLPQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPAR
TVLFTASRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVSPVVGKAIVQG
KPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPDLYNKVKDLQGAYNA
VTIDRYNHISSYHDIREQLEHLSSEFRCFLTKPEYLLPFLQPGRLVKVKNENEMFDWGII
VNFKKKNPKNPIRENTVIIIDILLHISKNSSEGCPVPCREGEEGDMEVVPVIHTLISQIS
SLRLYYPKDLRPSDNRKSVLKTIQEVKKRFPDGPPLLNPITDMHIEDDAFKDIVKKIEVL
EEKLYAHSLHKDPNVNILYEQFLHKEDLGNQLKQAKLELKQAKSILQMDELKCRKRVLRR
MAYCTASDVIELKGRVACELNGADELLMTEMIFNGLFNSLSVPQMVALISCFVCDDKSNE
MPKSTEELSGPLRQMQDLARRIAKVSTEANLELDEDTYVERFKPYLMDVVYAWCKGATFL
QICKMTDIFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAASL
YL
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggctaattttactgaagacttatttgatgtttttgaagaagcagaagatatagtagaa
gtgattccaactccggtgaaaccaagaaatgaagatttaaatacatcgtttaatgaaaag
aaaactaatttagaaagtggcactaaacgggaatttgaaaatgattctgatgaattagtt
tccaaaaaattacgatctgatcctgtattggaagatttaaatatagaagaattagcacca
cgtattaaaatacatacaatagaaacaattgaatcatgtacacatgaagttgcagttcct
ccagattatgaatatgtaccattagagagtaaacaaagcaaaccagcaaaagaatacaaa
tttgtattagatcctttccaaaaagaagcaatcttatgtattgaaaataatcaatctgtt
ttagtttctgcacatacatcagctggtaaaactgttgttgcagaatatgcaatagcatgt
tcattaagagataagcaaagagttatttatacaacacctataaaggcattaagtaatcaa
aagtatagagaattttttgaagaatttaaagatgtaggtttagtaactggagatgtaaca
attaatccaacagcaagtgtgcttattatgactactgaaattttaagaaatatgctttat
cgtggatctgaggtaatgcgtgaagttggatgggtaatttttgatgaaattcattatatg
cgtgataaagaaaggggagttgtatgggaagaaacattaatattattaccagataatgtg
cactatgtatttctttctgctactatacctaatgccagacaatttgtagaatgggttgca
catttacataagcaaccatgtcatgttgtttatacagattacagaccaactcctttacaa
cattatatatttcctgttggtggagatggtattcatttggttgtggatgaaatgggacaa
tttaaagaagaaaattttaatagggcaatggcttgtttgcaacatagtgatgcagctaaa
ggagatagtaaaggtcgcaaaggtggtattcgtccatcaaatgctggacaaacaaatatt
tttaaaatggtcaaaatgattatggaaagaaattttgcacctgtaattatatttagcttt
tccaagaaagattgtgagatatatgccatgcaaatggctaaattagatttgaatacatta
gaagaaaaaaagttggtagatgaagtatttaataatgctatggatgttcttaatgaagaa
gatcgacgtttaccacaagttgaaaatgtgctaccacttttaagacgaggaataggaatt
catcatggtggacttttacctattctgaaagaaactgtagaaatattatttggtgaagga
ttaataaaagcattatttgcaacagaaacttttgctatgggattaaatatgccagcacga
acagttttatttacagcatcacgaaaatttgatggtaaagactttcgttggattacatct
ggagaatatatacaaatgtctggtcgagcaggtagaagaggtttagatgaaaagggaata
gtaatattaatgatagatgagcaagttagtccagttgttggtaaagcaattgtacaagga
aaaccagatcctattaattcagcatttcatttaacttataatatggttttaaatcttttg
agagttgaagaaattaatcctgaatatatgcttgaaagaagtttttatcaatttcaaaat
caagcctctattccagatctatataacaaagtaaaggatttacaaggtgcatataatgca
gtaactattgataggtataatcacatatcttcctatcatgatatacgtgagcaacttgaa
catcttagtagtgaatttagatgttttttaacaaaaccagaatatttacttccattttta
caacctggaagattagtaaaagtaaaaaatgaaaatgaaatgtttgattggggtataatt
gtaaatttcaaaaaaaaaaatcctaaaaatccaataagagaaaatactgttattattatt
gatatattacttcacatttctaaaaactctagtgaaggatgtcctgtaccttgtcgagaa
ggagaagaaggtgacatggaagtagttcctgttatacatacattaatttctcaaattagt
tcacttagattatattatccaaaagatttaagaccatctgataatagaaaaagtgtatta
aaaacaatacaagaagtaaaaaaaagatttccagatggaccaccattgttaaatcctatt
acggatatgcatattgaagatgatgctttcaaagatattgttaaaaagattgaagtatta
gaagaaaaattatatgctcattctttgcataaggatcctaatgtaaatattctatatgaa
caatttttacataaagaagatttaggtaatcaactaaaacaagctaaattagaattaaaa
caagctaaatcaatacttcaaatggatgaattaaaatgtagaaaacgagtattgcgaaga
atggcctattgtacagcatcagatgttatagaattaaaaggcagagtagcttgtgaactt
aatggagctgacgaattgttaatgacagaaatgatttttaatggtttatttaattcatta
agtgtaccacaaatggtagcattaattagttgttttgtttgcgacgacaaatcaaatgaa
atgcctaagagtactgaagaattaagtggtccacttagacaaatgcaagatttagctcga
agaatagcaaaagtatctacagaagctaatctagaattagatgaagatacatatgtagaa
cgatttaaaccatatttaatggatgttgtatatgcttggtgtaaaggagctacttttttg
caaatttgtaaaatgacagatatatttgaaggttctattataagatgtatgcgtcgtttg
gaagaagttcttagacaattatgtcaagcagccaaaaatattggaaatacggatttagaa
aataaatttagtgaagcaattaaacttataaaacgtgacattgtctttgctgcatctttg
tatttgtaa
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integrated database retrieval system
