Apis florea (little honeybee): 100870462
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Entry
100870462 CDS
T09140
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X3
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aflr
Apis florea (little honeybee)
Pathway
aflr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aflr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100870462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aflr03019
]
100870462
Messenger RNA biogenesis [BR:
aflr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100870462
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100870462
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
HTH_upst_double_PIN
Motif
Other DBs
NCBI-GeneID:
100870462
NCBI-ProteinID:
XP_012340948
LinkDB
All DBs
Position
Unknown
AA seq
2402 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLNKKNFRDSCQEISVLVQWKGLEADRHLLRSLLSCIDFSTG
EPPESSAKDYFQVQLLKQECTNLLSKPSFISNLCFAIDHPFHQQKTLNPSPKFFLRLKKV
LGLTLVQEVAFAIALLHSENTEIRTLALEHIQKQLPELIKNYINSETSNRHHEEGLHDSL
PEVLHLILSQAFHSANQFGLLSEAKEKFLKNLRRDFPRELVPVVLAPLLYPDNGETPQTK
IELNMAVNQMDGNSLVELIMELGYGFTSSVEECRSALAGLGAREISPACAARVLAHMARS
CNNLDDAGGLQSFWSNSGTTQDANKEKSSDNSAPSTWNIEVFVQALKEIQSTLSWNEVIV
KLDHAEFIIKDRQGLNLLITGLRLGLQHQGYPPDMFPVELFYRHWDNVEGQFSLVQQILK
CPDIFCFADYPYHSVTVDVLKAAPESDSKEAQTWRSLNVVELLLHMAERGLYGPVQEIFK
WPIQHCPDVLVLALLQINAPITLLRQELLSTLMPIFLGNHPNSAVILHHAWHGNTVKIKS
IIMHAMAEWYIRGDHDQTRLSRILDVAQDLKALTHLLTAQSYPFVIDLACLASRREYLKL
EKWLTDKIREQGEVFVTACVKFLQRRCPQVMGPGIKEDLTVPKASQLPQETLTTMLACLQ
VCAGSVSQECSEAIMTMVQNCSLMLSKSTMNRPPPPGVLRHRGLEPFNPATLGGQLFSSK
QVDPLGNLSSSLASMGLGSSLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPGSTTIGGLGRLGPPTGIEKARIPETSNLFPDMAQNVSKEIE
DEANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGSKREREVFNCMLRNLFEEYRFFPQY
PDKELQITAQLFGGIIERGLINSYMTLGLALRFVLDALRKPEGSKMYYFGITALDRFKSR
LKDYQTYCEHVRAIQHFSEFPPHLIEYIEYGLQGQEPPTRPQGPVLPKTLAAMLAPVTTP
YKTITTTTITTSTTQAKSSTTPTTSLSARPSIANATNIDTLLVATDKEEKITTPPEALQD
KTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCLK
SPEVYKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILHIDIDL
KSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKL
NLKFEIEVLCKNLSIDVGELKPALYLKDPEKLRNLEYQLSHPNKKSESNNNQQQSQGPIE
ELVGPTTTGTIVPQTAPANTTPSLPTGPPEPRFNYMDISVTGIANISQHITINNNLPLFQ
THPHLKQFVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARHM
VRNLTAGMAMITCRDQVLASISTNLKQAFLTAMMGTTPQQKELAEQAANVVAADNMELAC
AFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLAKYQAERMPEQIRLKVGGVT
PQQMAVYEEFARNIPGFLPLSERDTQALLMPKPVTEPAVTAFAANPAVAVATAQQVAAYA
AAVSNDEVGAMLEKLATEVEVLLAAMGPAAPPPQHAALHSLLESIILTRRSRDAGAAMAL
LKKAVEGLLDGPTISSGVVDSEIILRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLTEC
REEFRYNFEAVDYLIRSHLISLPQYDLALAQAIDSGNAMATAFAMQLMQLYLIDERQTTH
VTESDLCNTIEILARIAHHRAPPEGILLFRLTSLMESLRANHDPAVLADRAPAGPTAHIH
SGILQVRARDFDDPPGLMEKTEYLLREWVSMHHNPTHARDPTKAFGMFVHQMNIHGILKT
DDLITRFFKLSTQMCVDLCYRALAETNAAPSVVRAKCFHSLDAFVRLVALLVKHSGDSTN
THTKINLLNKVLGIVAGVLLQDHEIRGTDFHQLPYHRIFIMLFLELCAPEPVLEAVNYQV
LTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFKYL
APYLRNAELAKPVTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMKNLILSA
YPRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASMIQPLSFKKELDSYLKARAPVTFLS
ELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAIAFIRSKGHTPNMSTIAHSAHMDIFQNL
AVDLDTEGRYLFVNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIV
NRPHPWGLLITFVELIKNPTYKFWTHEFVHCAPEIEKLFESIARSCMVQKQVQPTPEPEI
PE
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaattta
aataagaaaaattttcgggacagctgccaagaaatatcagttctggtgcagtggaagggt
ttggaggcagacagacatttgctgcgctctttactctcgtgcatcgacttttcaacagga
gaacctccagaatcaagtgcaaaagattattttcaagtgcaacttctaaaacaagagtgt
actaatcttcttagcaaaccttcttttatttctaatctgtgctttgctatagatcatcca
tttcatcaacaaaagactttgaatccatcaccaaagttttttttacgtttaaaaaaggta
cttggtttaactctagtacaagaagttgcatttgcaattgcattactgcattctgagaat
actgaaattcgtacattagctttagaacacatacaaaaacagctgcctgaattgataaaa
aattacattaattctgagacaagcaatagacatcacgaagaaggattgcacgattcattg
cctgaagttcttcatcttatattatctcaggcttttcattcagccaatcaatttggcctt
ttatctgaagcaaaagaaaaatttctcaagaatttaaggcgcgattttccccgtgaactg
gtaccagtggtgctagcaccactcttgtacccagataacggggaaactccgcaaaccaaa
atcgaattaaacatggctgttaaccaaatggatgggaattctctagtagaattgattatg
gaattaggatatggatttactagtagtgttgaagaatgtcgttcagctttagctggctta
ggagctcgagaaatttctccagcatgtgcagctagagttttagctcatatggcacgtagc
tgtaataatcttgatgatgctggaggattacaatcattttggagtaattctggaactaca
caagatgcaaataaggagaaatcaagtgataattccgctccttctacatggaatattgaa
gtttttgttcaagcattaaaagaaattcaatcaacattatcctggaatgaagtaatagtt
aaattagatcatgcagaattcattattaaagatagacaaggattgaatttattaatcaca
ggattaaggttgggcttgcaacatcaaggatatcctccagatatgtttcctgtggaactt
ttttatcgtcattgggacaatgtagaaggacagttttctctagtacaacaaattttaaag
tgtcctgatatattttgttttgctgattatccatatcattctgtaactgttgatgtattg
aaagcagcaccagaaagtgatagtaaagaagcacaaacttggagatctttaaatgtagtt
gaattactcttgcatatggcagaaagaggattatatggaccagttcaagaaatatttaaa
tggcccattcaacactgccctgatgttcttgtattggcattattacagattaatgctcct
attactttactcagacaagaattacttagtacattgatgcctatttttctgggaaatcat
ccaaattcggctgttattttacatcacgcatggcatggaaatacagttaaaataaaatct
attattatgcatgctatggcggaatggtatatacgtggagatcatgatcaaacaagatta
tctcgtattcttgatgttgctcaagatcttaaagcattaactcatttattgactgctcaa
tcatatccatttgttattgacttagcttgtttagcttcaagaagagaatatttaaaatta
gaaaaatggttgacagataaaattagagaacaaggagaagtatttgttactgcgtgtgta
aagtttttacaaagacgttgtcctcaagttatgggacctggtataaaagaagatcttact
gtaccaaaagcaagtcaactccctcaagaaacattaacaacaatgcttgcttgcttgcaa
gtgtgtgctggtagtgtatctcaagaatgttcagaggcaataatgacaatggtacaaaat
tgtagtctaatgttgagtaaaagtacaatgaatagacctcctccgccaggagttttacga
catcgtggattggaaccttttaatccagcaactttgggaggacaattgttttcttcaaaa
caagtggatccacttggaaatttaagttcaagtcttgcatctatgggtttgggttccagt
cttggtccaccaagtagttctgcatttaatttaccaggtgctcttggacctttagtatca
gcacctggttctccttctcgtctcatgggaccttccccaagtccatttccgatgttgcca
ttatcttcgcaattacattcaggaccagttggtacacaaggaccatctgtcttacctggt
agtacaacgattggaggattaggacgacttgggccaccaacaggcattgaaaaagcgaga
atacctgaaacatcaaacttatttcctgatatggcacaaaatgtttccaaagaaattgaa
gatgaagcaaatagttactttcagcgtatatacaatcatccaccacatccgactttatca
attgatgaagttcttgatatgttaaaaaagtttcaagattctggtagtaaaagagagaga
gaagtattcaattgtatgttaagaaacttattcgaggaataccgattttttcctcaatac
ccagataaagagttacaaattacggcacaactatttggaggaattatcgaaagagggttg
attaatagctatatgacacttggattagctttgagatttgtgttggatgcacttaggaaa
ccagaaggcagcaagatgtattactttggcataacagctctggatcgtttcaagagccgt
ttaaaagactaccaaacatactgtgagcatgtcagggcaattcaacatttcagtgagttc
ccaccacatttaattgagtatatagaatatggattacaggggcaggagcctcccacgaga
cctcaaggtccagttctcccaaaaactttagcagctatgttggcaccagttactacgcca
tataaaactattacaacaacaacaataacaacaagtactactcaagcgaaatcgtctacg
actccaaccacttctctctcagctagaccttccattgctaatgcaacaaacattgataca
ttattagtagcaacagataaagaagaaaaaattacgacaccaccagaagctttacaagat
aaaacagcatttatctttaataaccttagtcaactcaatttacaacaaaaatgtgatgaa
attcgggaaattgtcacagaagaatattggccttggatggctcagtatttagtaatgaaa
cgtgcaagcatagaattaaatttccatgctttatattcaaattttttagattgtttgaaa
tcgccagaagtatataaaatggttactagagaaacatttagaaacataaaagttttattg
cggagtgataaaggaatagcaaacttttctgatcgttcacttttaaaaaatttaggtcat
tggttgggaatgttaacccttggcagaaataaacccattttacatattgatatagattta
aagagtttactcgttgaagcatatcataaaggtcaacaagaacttctttatgttgttccc
tttgttgctaaagtactagaaagttgtgcaaaaagtcgtgtttttcgtccacctaatcct
tggacaatggcaattatgaatgttttagcagaattgcatcaagaacctgatttaaaactt
aatttaaaatttgaaatcgaagtgttatgtaaaaatttaagtattgatgttggtgaatta
aaacctgcactttatttaaaagatccagaaaaattgcgaaatttagagtatcaattatca
catcctaataaaaaatctgaatcaaacaacaatcaacaacaatctcaaggtcctattgaa
gaattagttggacctactacaactggaactattgttccacaaacagctccagcaaataca
acaccatctttacctactggtccaccagaaccgcgttttaattatatggatatatctgta
acaggcattgccaatatttctcagcatatcactattaataacaatttgccattattccaa
acacatccacatttaaaacagtttgttcgtccagctgttgaaagagcaattcaagaatgg
attcatcctgtagtggatagatcaataaaaatagctctaactactagtgaacagattgtg
agaaaagattttgcgttagatccagaagaagttcgtatgagaacagcagcaagacatatg
gttcgtaatttaactgctggaatggctatgattacttgccgtgatcaagttttggcatca
attagtacaaatctgaaacaagcttttctaactgcaatgatgggtacaactccacagcaa
aaagaacttgcagaacaggcagctaatgtagtagctgctgacaatatggaacttgcttgc
gcatttgtacaaaaaacagctattgaaaaagcaattccagaaatggataaacgtttatta
aatgaaattgaattacgaaaaattgcacggcaagaaggaagaagatattgtgatccatta
gctaaatatcaggctgaaagaatgcctgaacaaataagattaaaagttggcggagtaact
cctcaacaaatggctgtttatgaagaatttgcgagaaatattccaggatttttaccatta
tctgaacgagatacacaagctttactaatgccaaaacctgttacagagcctgctgtaact
gcatttgctgctaatccagccgttgcagtagcaacagcacaacaagtcgctgcatatgca
gcagcagtgagtaatgatgaagttggagccatgttagaaaagcttgcaactgaagttgaa
gtattacttgctgcaatgggtccagccgcacctcctccacaacatgctgcccttcatagt
ctcttagaatcgattatcctaacacggaggtcaagagacgctggtgctgctatggcatta
cttaaaaaggctgtagaaggattattagatggccctaccatttctagcggcgtagtagat
tcggaaattatattacgatatagagaacttcatttacgcattctaaaatgtcttcaagat
ccacgtgcttatggtatgcaatggacaaacaaacacgttactcgatgtttaacggaatgt
agagaagaatttcgatacaattttgaagctgttgattatcttattagatctcatttaatt
agtcttccacaatacgatttagctttggctcaagctatagattctggaaatgctatggca
acagcatttgcaatgcaattgatgcaactttatttaattgatgaaagacaaactacacat
gttactgaatctgatttatgtaatacaattgaaatacttgcaagaatagctcatcataga
gcaccacctgaagggattttactatttagactgacaagtttaatggaatcattgcgtgct
aatcatgatccagcagtattagcagatagagctcctgctggtcctacagcacatattcat
tctggaattctacaggtgagagctcgtgattttgatgatccacctggattgatggagaaa
acagaatatttattacgcgaatgggtttcaatgcaccataacccaacacacgctcgtgat
cctacaaaagcttttggaatgtttgttcatcaaatgaacattcatggaattcttaaaact
gatgatctcataacaagattctttaaattaagcactcaaatgtgcgttgatctgtgttat
cgtgctttagctgagacaaatgctgcaccatcagttgttcgtgcaaaatgtttccattcg
ttggatgcatttgttcgtttagtcgcgcttttggtaaaacattctggtgatagtacaaat
actcacacaaaaattaatttactaaacaaggttttgggaattgtggctggtgtattacta
caggatcatgaaatacgaggaaccgattttcatcaattgccctatcacagaattttcatt
atgcttttcctggagctttgtgctcctgaacctgtgttagaagcagtaaattatcaagta
ttaactgctttttgccatacgctacatatacttagaccagccaaagcttcgggattttgt
tacgcttggctagaattagtttcacacagagtttttattgggcgtatgcttgcgattaca
ccgcaacaaaaatgttggggcatgtatgcgcaacttttaatcgatctatttaagtatctt
gcaccataccttcgaaatgctgaacttgcaaaacctgttactttattatacaaaggaact
cttagagtactattagtcttattacacgattttcctgaatttctttgtgattatcattat
ggattttgtgatgtaattccacctaattgcatacaaatgaaaaatcttattttaagtgca
tatccaagaaatatgcgattacctgatccatttacaccaaacttaaaagttgatatgcta
caagagatagctcatgctcctcgagtattaaccaattttgcgtctatgatacaaccatta
agtttcaaaaaagaacttgattcgtatttaaaagcgcgagctccagttacttttctttct
gaattgcgcagtaatttacaagtatctcaagaagcaggtgttcgatataatattcagtta
atgaatgctctagtactttatgttggaacacaagctatagcttttattcgcagtaaagga
catactcctaatatgtctactattgcacattctgcacatatggatatatttcaaaactta
gcagtcgatctcgatacagaaggtcgttatttattcgtaaatgcaattgcaaatcaattg
cgatatcctaacagtcacacgcattacttcagttgcactcttctatacttatttgctgaa
gctaatacagaagcgatacaagaacaaattacgagagttcttcttgagagacttattgta
aatagacctcatccatggggtcttctcattactttcgttgaacttattaaaaatccaaca
tataaattctggacgcatgaatttgttcactgtgcaccagaaatcgaaaaattattcgag
tcgatagctcgatcgtgtatggttcaaaaacaagtacagcccactccagaaccggagatt
ccagagtga
DBGET
integrated database retrieval system
