Apis florea (little honeybee): 100870960
Help
Entry
100870960 CDS
T09140
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aflr
Apis florea (little honeybee)
Pathway
aflr03020
RNA polymerase
aflr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aflr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100870960
09124 Replication and repair
03420 Nucleotide excision repair
100870960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aflr03021
]
100870960
03400 DNA repair and recombination proteins [BR:
aflr03400
]
100870960
Enzymes [BR:
aflr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100870960
Transcription machinery [BR:
aflr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100870960
DNA repair and recombination proteins [BR:
aflr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100870960
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
100870960
NCBI-ProteinID:
XP_012348734
LinkDB
All DBs
Position
Unknown
AA seq
1904 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSIERKPGHGGCGRYQ
PNLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHAPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAVLRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPNKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKVGIEIPMAVGAGVMGTAGMFFGSVAT
PSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTP
ASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPT
YSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSP
TSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggctacgtccgactccaaagcgcctctgcgaactgtaaaaagggtccaatttggcatt
ctttctcccgatgaaatacgtcggatgtccgtcacagatggcggtattcgttttccagaa
actatggaaggtggtcgtccaaaacttggtggacttatggatccaagacaaggtgtcatt
gatagaaattctagatgtcaaacatgtgcgggtaatatgacagaatgtccaggacatttt
ggtcatatagatttggcaaagccagtttttcatgttggttttataacaaaaacaataaaa
atcttaagatgtgtatgtttttattgttcaaaactacttgttagtccacataatccaaaa
attaaagaaattgttatgaaaactaaaggtcaaccacgaaaacgtcttacatttgtttat
gatttatgtaaaagtaaaaacatttgtgagggtggtgatgaaatggatattaataaagaa
aatcaggaacagcaatctatagaaagaaaacctggacatggtggatgtggtagatatcaa
ccaaatcttcgaagatctggtttagatgttactgctgaatggacacatgtaaatgaagat
tcacaagaaaaaaaaatggcacttacagcagaaagagcttgggagattttaaagcatatt
acagatgaagaatcatttattcttggtatggatccgaaatttgcacgaccagattggatg
gtagtaactgttttacctgttccacctttatcagttagaccagcagttattatgtatggt
tctgctaaaaatcaagatgatttaacacacaagcttgctgatattataaaagcaaataat
gaattaatcagaaatgaacaagctggagcagcagctcatgtgatatcagaaaatataaaa
atgttacaatttcatgtagcaacattagttgataatgatatgcctggtatgccaagagct
atgcaaaaatcaggtaaacctttaaaagctataaaagcgagattaaaaggaaaggaaggt
agaatacgaggaaatttgatgggtaaacgtgttgatttttctgctcgtactgttattact
cctgatcccaatttacggatcgatcaagtgggcgtgcctagaagtattgctcaaaattta
acatttcctgaaattgtaacgccttttaatatcgacaaaatgcaagaacttgttagacgt
ggaaattcgcaatatccaggagctaaatatattgttcgagataatggagaaagaattgat
ttgagatttcatccaaaaccatccgatctacatttgcagtgcggttatagagtggaacgt
catatccgagatggcgatttagtaattttcaatcgacaaccgacattacataaaatgagt
atgatgggtcatagagtaaaagttttaccatggagtacatttcgtatgaatcttagttgc
acatcaccatataatgccgatttcgatggtgatgaaatgaatttacatgccccacaatca
atggagactcgtgcagaagtagaaaatattcatgtaactccgcgtcaaattattacacca
caagctaataaaccagttatgggtattgtacaagatacacttactgctgtaagaaaaatg
actaaaagagatgtttttattgaaaaagaacaaatgatgaatattcttatgtttttacct
agttgggatggcaaaatgcctcaaccttgcatactaaaaccaaaacctctatggactggt
aaacaaattttctccttgattataccaggcaatgtaaatatgataagaactcacagcaca
catccagatgaagaagatgatggaccatacaaatggatttctcctggtgatactaaagtc
atggtagaacatggagaacttgttatgggtatactttgtaaaaaaactttaggaacatct
gctgggtcattgcttcacatttgtatgttagaattgggacacgaagtctgcggacgattt
tatggaaatattcaaactgtaattaacaattggttacttctggaaggtcattcaattggt
atcggagatactattgctgatccacagacttatttggaaattcaaaaagccatcaaaaag
gccaaagaagacgtgatagaagttattcaaaaagcacacaatatggaattagaacctaca
ccaggtaataccttaagacagacttttgaaaaccaagtaaacagaattctgaatgatgct
cgtgacaaaactggtggttctgccaagaaatctctgacagaatataacaatctaaaagct
atggtagtatcaggatcaaaaggatctaatattaatatttctcaagttattgcttgtgtc
ggtcagcaaaatgtagaaggtaaacgtattccatttggttttcgtaaacgaacattgcca
cattttatcaaggatgattatggtcctgaatccagaggattcgtcgaaaattcatatctt
gctggtttgactccatctgaattttattttcatgctatgggtggtcgtgaaggtcttatc
gatactgctgtaaaaactgcagaaactggttatattcaacgtcgtttaataaaagctatg
gaatctgtaatggtgcattacgatggaacagttagaaattctgtgggacaacttattcaa
ttacgttatggtgaagacggtttatgcggtgaaactgtggaatttcagaatctacctact
attaaattgagtaacaaagcatttgaaaaaaaattcaaatttgatccaactaatgaaaga
tatcttcgtcgtattttcaatgaagatatcgttagagaaatgatgggatctggtgaagta
atatctgaattagaaagagaatgggaacaattaaataaggatcgtgctgtacttcgagag
attttccctagcggagaatcgaaagtagtattgccttgtaatttgcaaagaatgatttgg
aatgtacaaaagatttttcatataaataagcgtgcacctaccgatcttagtcctatgaaa
gtcatacaaggtgtgaaagatcttttagataaatgtattattgtagctggtgatgataga
cttagcaaacaagctaatgaaaatgccacattattattccaatgtttagtaagatctact
ttatgtacaaaatgtgtttctgaagaatttagattatccagtgaagcttttgaatggctt
attggagaaattgaaactagattccaacaagcacaggtatcacctggagaaatggtaggt
gctttagccgcacaatcacttggtgaacctgcaactcaaatgacacttaatacttttcat
tttgctggtgtatcatcgaaaaatgtaactctcggtgtgccaagattaaaagaaattata
aatatcagtaagaaaccaaaagctccctccttgactgtatttttgacgggagctgcagca
agagatgctgaaaaagcaaaaaatgtactttgccgattagaacataccacattaagaaaa
gttacagcaaacactgcgatttattatgatccagatccacaaaataccgtaatcgcagaa
gatcaagaattcgtaaacgtttactatgaaatgcctgattttgatccaaataaaatatca
ccatggttacttcgaattgaattagatcgcaaaaggatgaccgataagaaattaactatg
gaacaaattgcggaaaagattaatgccggcttcggtgacgatttaaactgtatatttaat
gacgataatgccgaaaaattagttcttcgaattagaataatgaatagcgatgataacaaa
tttcaagatagcgaggaagaaactgttgataaaatggaggatgatatgtttcttcgatgt
attgaagcaaatatgcttagtgacatgacattacaaggtattgaagcaattggaaaagtg
tacatgcatttacctcaaactgatgctaagaaacgtatagttatcacagaaactggtgaa
tttaaagcaatagcagaatggttattagaaacggatggtacaagtttgatgaaagtattg
agcgaaagagatgttgatccagttagaacatttagcaatgatatttgtgagatatttcaa
gtattaggtatagaggctgtgagaaaatcggtagaaaaagaaatgaatgctgtgttgcaa
ttttacggtctttacgtaaactatcgtcaccttgctttgctttgtgacgtaatgactgct
aaaggacatttaatggctataactcgtcatggaattaatagacaagatactggtgctctt
atgagatgttccttcgaagaaacagtagatgttctattggatgccgcatctcatgcggag
gtagatccaatgagaggagtatcagaaaatattatcatggggcaacttccacgtatagga
acaggatgtttcgatttgctattggatgccgagaaatgtaaggtcggtattgaaatacca
atggcagtaggtgctggtgtgatgggaactgctggaatgttctttggtagtgttgctaca
ccaagtatgagtcctcaaatgacaccttggatgggtgccacacctggttatggagcttca
agtatgtcacctgcattgggaagtggtatgacaccaggaggagcatgtttctcgccatca
ggagcatcagatgcttcaggactttctcctgcatattctgcatattctccacaacctgga
agtccaggaagtccaggacctagcatgagtccatatccaatgtcaccagcaggtggcgcc
tcaccaagttattcacctacatctccagcctatttgccaacatcgcctagtataacacca
tcaagtccaaactattcacctacaagtcccacttattcacctaccagtccaaattattca
ccaacaagtccaagttattcaccaacgagtccaagttattcgccaacatcaccaagttat
tcaccaacaagtccaagttactcaccaacatcaccaagttattcaccaacaagtccgagt
tattcaccaactagtccaagttactcaccaacaagcccgagttattcgccaacaagtcca
agctattcgccaacaagtccaagttattctcctacaagtccaagttattcaccaacaagt
ccaagttattcgccaacaagtccatcatattcaccaacgtcaccgagttattcaccaaca
agtccaagttattcaccaaccagtccaagttattcaccgagttcaccaaattatacacct
gcttcaccatcttattctccaacaagtccaagttattcaccaagttctcctcaatattca
ccagctagtccaagttattcaccaagtagtccaaaatattctccaacgagtccatcgtat
tctcctacatctccatcatttgctggaacttcgccacaatatacaccagcgagtccaaca
tattctccaacaagtccaacatattcaccaacgagtccatcatattcacctagttcacca
caacacacagcatcaggaagtacaagatattcacctagtagtccaaattattccccaact
agtccaacatattcgcctacaagtcctcaatattcaccgtcgagtaccaaatattcacct
accagtccaacatatacaccgactagtccaagttattcgccgacgagtccaacgtattcc
ccaccagtaccgggttattcaccaacgagccccacgtattcccctgcatctccagcttac
gaaacagatgattaa
DBGET
integrated database retrieval system
