Pseudoblastomonas flavescens: QQW98_06170
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Entry
QQW98_06170 CDS
T09518
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aflv
Pseudoblastomonas flavescens
Pathway
aflv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aflv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QQW98_06170 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aflv03021
]
QQW98_06170 (rpoB)
03400 DNA repair and recombination proteins [BR:
aflv03400
]
QQW98_06170 (rpoB)
Enzymes [BR:
aflv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QQW98_06170 (rpoB)
Transcription machinery [BR:
aflv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QQW98_06170 (rpoB)
DNA repair and recombination proteins [BR:
aflv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QQW98_06170 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
NIR_SIR_ferr
Motif
Other DBs
NCBI-ProteinID:
WJY19798
LinkDB
All DBs
Position
1185015..1189226
Genome browser
AA seq
1403 aa
AA seq
DB search
MATKAGKTAPNAALNNRGGASKKRIRKIFGDVHEVIPMPNLIEVQRESYEQFLRSDPSID
YVSGLEKTLRSVFPIRDFAGTAELDFVHYELEPPKYDTTECRQRGITYAAPMKVTLRLIV
FEVDQETETRSVLDIKEQDVYMGDMPLMTGNGTFIINGTERVIVSQMHRSPGVLFDHDRG
KTHSSGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKQPVTALLYALGLTAEDILE
HFYDRVTWKRAAGAKGADDAAGWTIPFVAEQWRGAKPAFALVDAKTGEEVFPANKKISPR
AANKAEKDGLDTLLIPTEEIFGRYAAYDMIDEKTGRIYVEAGEEVGPENLEKLDNAGVDA
IELLDIDHVTTGPWIRNTLQVDKAENREEGLEAIYKVMRPGEPPTKETAEALFEGLFFDD
DRYDLSAVGRVKLNMRLGLDAEDTVTTLRKEDILAVVKELVDLKDGKGEVDDIDNLGNRR
VRSVGELLENQYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLS
QFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLI
NSLSTFARVNKYGFIETPYRQVKDGKVSSDVQYLSAMEEQKHTVAQASADTDKDGKFVEE
LVSARENGEFVMTPNENVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPL
VKAEAPFVGTGMEATVARDSGAAISARRGGIVDQVDATRIVIRAQGDVEEGESGVDIYTL
QKFQRSNQSTCINQRPLVKVGDVVETGEILADGPSTDLGELALGKNSLVAFMPWNGYNYE
DSILISERIVKDDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYI
GAEVHPGDILAGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGTSGTVVEVRV
FNRHGIEVDDRTRAIQNEEIERLKKDAADERAILNRATYNRLADMLEGQTASAAPKGVKK
GTVIDAALLDTVEKHEWFKFAVADDKTQGQVEAIKTQYDESVKRIDEKFEDRKEKLERGD
ELAPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNP
LGVPSRMNVGQIFETHLGMAARGLGQQITQALEEWREANPDPDKAKPPQAVIDRMKDAYG
EEYHADIDSRTPAEIVEMAGLLKDGVPMGTPVFDGAREGDVTTMLEKANLPSSGQVTLFD
GRTGDAFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEME
VWALQAYGAAYTLQEMLTVKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLG
LNVELSSLTDGDEDEDGMQIAAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggccggcaagacagcccccaacgcagccctcaacaatcggggcggcgca
agcaagaagcgcatccgcaagatcttcggcgacgtgcacgaagtcatcccgatgccgaac
ctgatcgaggtccagcgcgaaagctacgagcagttcctgcgctccgatccctcgatcgat
tatgtctccggcctcgaaaagacgctccgcagcgtcttccctatccgcgacttcgccggc
accgccgagctcgacttcgtgcactacgagctcgagccgccgaaatacgacaccaccgaa
tgccgccagcgcggcatcacctacgccgccccgatgaaggtcacactgcgcctgattgtt
ttcgaggtggaccaggaaaccgaaacccgctccgtcctcgatatcaaggagcaggacgtc
tacatgggcgacatgccgctgatgacgggcaacggcaccttcatcatcaacggcaccgag
cgcgtgatcgtatcgcagatgcaccgttcgccgggtgtgctgttcgaccatgaccgcggc
aagacccactccagcggcaagtacctcttcgccgcgcgcgtgatcccgtaccgcggcagc
tggctggacttcgaattcgacgccaaggacatcgtcaacgtccgcatcgaccgcaagcgc
aagcagccggtcaccgcgctgctctacgccctcggcctgaccgccgaggatatcctcgag
catttctacgaccgcgtgacctggaagcgcgccgccggtgccaagggcgccgacgatgct
gccggctggaccatcccgttcgtggccgaacagtggcgcggcgcgaagccggccttcgcg
ctggtcgatgccaagaccggcgaggaagtgttccccgccaacaagaagatcagcccgcgc
gctgccaacaaggcggaaaaggacgggctcgacacgctgctgatcccgaccgaggaaatc
ttcggccgttatgccgcctatgacatgatcgacgagaagaccggtcgcatctatgtcgaa
gcgggcgaggaagtcggccccgagaaccttgagaagctggacaacgccggcgtcgacgcg
atcgaactgctcgacatcgaccatgtcaccaccggcccgtggatccgcaacacgctgcag
gtcgacaaggccgaaaaccgcgaggaaggcctcgaggcgatctacaaggtgatgcgcccg
ggcgaaccgccgaccaaggaaaccgccgaagcactgttcgaaggcctgttcttcgacgac
gaccgctatgacctgtcggctgtgggccgcgtgaagctgaacatgcgtctcggcctcgac
gccgaagacaccgtcaccacgctgcgcaaggaagacatccttgccgtggtcaaggaactg
gtcgacctgaaggacggcaagggcgaagtcgacgacatcgacaacctcggcaaccgccgc
gtgcgttcggtgggtgagctgctggaaaaccagtaccgcgttggcctgctgcggatggaa
cgcgccgtgaaggagcgcatgagctccgtcgacgtcagcaccgtgatgccgaacgacctc
atcaacgcgaagcccgccgtggctgccgtgcgcgagttcttcggctccagccagctctcg
cagttcatggaccagaccaacccgctgtcggaagttacccacaagcgccgcgtctccgca
ctcggcccgggcggtcttacgcgtgagcgcgcaggcttcgaagtccgcgacgtccacccg
acgcactatggccgcatctgcccgatcgagacgccggaaggcccgaacatcggcctgatc
aactcgctttcgacctttgcccgcgtcaacaagtacggcttcatcgaaacgccgtatcgc
caggtgaaggacggcaaggtctcctccgacgtgcagtatctctccgccatggaagagcag
aagcataccgtggcgcaggcttcggccgacacggacaaggacggcaagttcgtcgaagag
ctggtctcggcccgcgaaaacggcgaattcgtgatgaccccgaacgagaatgtcacgctg
atggacgtctcgcccaagcagctcgtctcggtcgccgcatcgctcattccgttcctggaa
aacgatgacgccaaccgcgcactgatgggttcgaacatgcagcgccaggccgtgccgctg
gtgaaggccgaagcgcctttcgtcggcaccggcatggaagccaccgtggcgcgtgacagc
ggcgcggcgatttccgccaggcgcggcggcatcgtggaccaggtcgacgcgacccggatc
gtgatccgtgcgcagggtgacgtggaagagggcgagagcggcgtggacatctacacgctg
cagaagttccagcgctccaaccagtcgacctgcatcaaccagcgcccgctggtgaaagtg
ggcgacgtggtcgaaaccggcgaaatcctcgccgacggcccgtcgaccgacctcggcgaa
ctggcgctgggcaagaacagccttgtcgcgttcatgccgtggaacggctacaactacgaa
gactcgatcctgatcagcgaacgcatcgtgaaggacgacgtgttcacctcgatccacatt
gaggaattcgaagtgatggcccgcgacacgaagctgggtccggaagacatcacccgcgac
atccccaatgtgggtgaggaagcgctgcgcaacctcgacgaggcgggcatcgtctacatc
ggtgccgaagtgcatccgggcgatatcctcgccggcaagatcacgccgaagggcgaaagc
ccgatgacgccggaagaaaagctgctacgcgccatcttcggcgagaaggccagcgacgtt
cgcgacacctcgctgcgcttgcccccgggcaccagcggcacggtggtggaagtgcgcgtg
ttcaaccgccacggtatcgaggtggacgaccgtacgcgtgcgatccagaacgaggagatc
gagcggctcaagaaggacgcggcggacgaacgcgccatcctcaaccgcgcgacctacaac
cgccttgccgacatgctcgaaggccagaccgcttctgccgcgccgaagggcgtgaagaag
ggcacggtgatcgacgccgcgctgctcgacacggtcgagaagcacgaatggttcaagttc
gccgtggccgacgacaagacgcagggccaggtcgaggcgatcaagacccagtacgacgag
agcgtgaagcggatcgacgagaagttcgaagaccgcaaggagaagctggagcgcggcgac
gagctcgctccgggcgtgctcaagatggtcaaggtcttcgtcgcggtgaagcgcaagctg
cagccgggcgacaagatggccggccgccacggcaacaagggcgtgatttctcgcatcctg
ccgcaggaagacatgccgttcctcgaggacggcacgccggtcgacatcgtactgaacccg
ctgggcgtgccgtcgcgcatgaacgtgggccagatcttcgagacgcacctcggcatggct
gcccgtggcctcggccagcagatcacgcaggcgctggaagaatggcgcgaagccaatccc
gatccggacaaggcgaagccgccgcaggcggtcatcgaccggatgaaggatgcgtacggc
gaggaatatcacgccgatatcgacagccggaccccggcagagatcgtcgagatggccggc
ctgctgaaggacggtgtgcccatgggcaccccggtgttcgacggcgcgcgcgaaggcgac
gtgaccaccatgctcgaaaaggcgaacctgccgtcttccggccaggtcacgctgttcgac
gggcgcaccggcgacgcgttcgaccgcaaggtgaccgtgggctacatctacatgctgaag
ctgcaccacctcgtggacgacaagatccacgcccgctcgatcggcccgtacagccttgtc
acccagcagccgctgggcggtaaggcgcagttcggcggccagcgcttcggcgaaatggag
gtctgggcgctccaggcctacggcgccgcttacacgctgcaggaaatgctgaccgtgaag
tccgacgacgtgatcggccggaccaaggtctacgaagcgatcgtcaagggcgacgacacg
ttcgaggctggcatcccggaaagcttcaacgtgctcgtgaaggaaatgcgcagcctcggc
ctcaacgtcgaactgtcctcgctcaccgatggtgacgaggacgaagacggcatgcagatc
gcggcagaataa
DBGET
integrated database retrieval system
