Pseudoblastomonas flavescens: QQW98_06175
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Entry
QQW98_06175 CDS
T09518
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aflv
Pseudoblastomonas flavescens
Pathway
aflv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aflv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QQW98_06175 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aflv03021
]
QQW98_06175 (rpoC)
03400 DNA repair and recombination proteins [BR:
aflv03400
]
QQW98_06175 (rpoC)
Enzymes [BR:
aflv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QQW98_06175 (rpoC)
Transcription machinery [BR:
aflv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QQW98_06175 (rpoC)
DNA repair and recombination proteins [BR:
aflv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QQW98_06175 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
RPOC_hybrid
YqfD
Motif
Other DBs
NCBI-ProteinID:
WJY19799
LinkDB
All DBs
Position
1189309..1193652
Genome browser
AA seq
1447 aa
AA seq
DB search
MNELTKFTNQLAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKYQLLSEDELIEAQDEYGEDAFSAS
IGAEAVKFMLMDLDLEQERDDLMEELATTKSKLKPAKIIKRLKVVESFIDSGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMILGLYYLSMDRDGEPGEGRILADIAEVHQALEV
GAVTLHSKITTRVPQTDEKGKEYMQRVDTTPGRMLIGECLPKSHTVPFEVVNRLLTKKEI
ADVIDQVYRHTGQKDTVLFADAIMTLGFRHAFKAGISFGKDDMIIPHEKDGLIEETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDTVANAMMDKIKATPKDEDGREAQINSIYMM
SHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVIVETDCKTKNALEMRAIVQGGSVIASLGERILGRTTA
EDIVNAATDEVIVKKNTLIDEAMVTEIEAAEVQQAKIRSPLVCEAEQGVCATCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNETSHLEATSDGTVQYRDMPTI
LDKKGRILSLARNGELLVIDAEGREREIHKLPYGTVLMHKDGASVKEGDRLAEWDPFTLP
IITEQAGVVKYQDLVEGKTLEERVDEATGIAQRVVTEYRATGRSKKDDLRARLTLLGEGE
SDEENAARYMLAPGTTLSVEDGQEVQAGDILARASREAAKTRDITGGLPRVAELFEARMP
KDVSVIAKISGKVEFVREYKAKRKIAIVPEEGDPVEYLIAKTKVIDVQEGDFVKKGDTLV
SGSPNPHDILEVLGVEALAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGD
TTLLPGEQVDYAEMMETNAKLAPRKKHAQGTPILLGITKASLQTRSFISAASFQETTRVL
TQASVEGKKDSLIGLKENVIVGRLIPAGTGAGMNRVRVTASSRDAALRAQYRKMQEALVL
ADTAEEEHEAELAQDEAAAIGDTPIGAAEGESHGSNEDAGDYLTEEAKEEGSDAASDEPT
QEPTDGE
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaaattcaccaaccagctcgccaagccggaaaccttcgaccagatc
cagatcggtatcgcgtcgccggaacgtatccgcagctggtccttcggcgaaatcaagaag
ccggaaacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccggtgaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtgtgcgaaaagtgcggcgtcgaagtgaccgtgaccaaggtccgccgcgag
cgcatgggccacatcgaactggctgcgccggtcgcgcacatctggttcctgaagtcgctg
ccgagccgcatcggcctgctgctcgacatgcaattgaagcagctcgagcgcgtgctgtat
ttcgaaagctacatcgtcaccgagccgggcctgacgccgttggagaaataccagttgctg
tccgaagacgagctgatcgaggcgcaggacgagtacggcgaagacgcgttctccgccagc
atcggggcggaagcggtcaagttcatgctcatggacctcgacctggagcaggagcgtgac
gacctgatggaagagcttgcgaccaccaagtccaagctcaagcccgcgaagatcatcaag
cgcctgaaggtcgtcgaaagcttcatcgattccggcaaccgcccggaatggatgatcctg
gaagtcgtgcccgtgatcccgcccgagctgcgcccgctggtgccgctggacggcggccgt
tttgcgacgtccgacctcaacgacctctatcgccgtgtcatcaaccgcaacaaccgcctg
aagcgcctgatggaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaatcggtcgacgccctgttcgacaacggccgccgcggccgtgtgatcacgggcgcc
aacaagcgcccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccg
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgcctcgatgcgaagggtctgtccatgaccctcaagcaggcgaagaaa
tgggtcgagaaggagcgcaaggaggtctgggacatcctcgacgaagtcattcgcgagcac
ccggtcatgctgaaccgcgccccgacgctccaccgtctcggcatccaggcgttcgagccc
gtgctgatcgaaggcaaggcgatccagctgcacccgctcgtgtgttcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtgccgctttcgctggaagcccagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatgatcctgggcctgtattacctgtccatggaccgcgacggc
gagccgggcgaaggccgcatcctggccgacatcgccgaggttcaccaggcactggaagtc
ggcgccgtgacgctgcattccaagatcaccacccgcgtcccgcagacggacgaaaagggc
aaggaatacatgcagcgcgtggacaccacgccgggccgcatgctgatcggcgaatgcctg
cccaagagccacacggtgcccttcgaggtcgtgaaccgccttctcaccaagaaggaaatc
gccgacgtgatcgaccaggtctatcgccacaccggccagaaggacacggtactgttcgcc
gacgcgatcatgacgctgggcttccgccacgccttcaaggccggcatttccttcggcaag
gacgacatgatcatcccgcacgagaaggacgggctgatcgaggaaaccaaggcgctggtt
gccgattacgagcagcaataccaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcgtggagccgttgcggcgacacggtggcgaacgccatgatggacaagatc
aaggcgacgccgaaggacgaggacggccgcgaggcgcagatcaactcgatctacatgatg
agccattcgggtgcgcgtggttcgccggcgcagatgaagcagctcgccggtatgcgtggg
ctgatggccaaaccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgttcttgaatacttcaactccacccacggcgcccgcaagggcctggccgac
acggcgctgaagacggcgaactcgggttacctgacccgccgcctcgtcgatgtgtcgcag
gactgcgtcatcgtggaaacggactgcaagaccaagaacgcgctggaaatgcgtgccatc
gtgcaaggcggcagcgtgatcgcttcgctcggcgagcgtattctcggccggaccacggcg
gaagacatcgtcaacgccgcgacggacgaggtcatcgtcaagaagaatacgctgatcgac
gaagccatggtgacggagatcgaagctgccgaagtgcagcaggcgaagatccgttcgccg
ctggtctgcgaggccgaacagggcgtttgcgcgacctgctacggccgcgatcttgcccgc
ggtacgccggtcaacatcggcgaggctgtcggcgtcattgccgcgcagtcgatcggcgag
cccggtacccagctgacgatgcggaccttccacatcggcggcgcggcgcaggtcaacgaa
acgagccacctcgaagccaccagcgacggcaccgtgcagtatcgcgacatgccgacgatt
ctggacaagaagggccgtatcctcagcctcgcccgcaacggcgaactgctggtgatcgac
gccgagggccgcgagcgggaaatccacaagctgccttacggtaccgtcctgatgcacaag
gatggcgcatccgtgaaggaaggcgaccggctggcggaatgggatccgttcaccctgccg
attatcaccgaacaggccggtgtggtgaagtaccaggacctggtcgaaggcaagacgctg
gaagagcgcgtggacgaagccaccggcatcgcccagcgcgtggttaccgagtatcgcgcc
accggccgttccaagaaggacgacctgcgggcccgcctgaccctgctcggcgaaggcgag
agcgacgaggaaaatgccgcgcgctacatgctggcgccgggcacgaccctgtcggtcgag
gacggccaggaagtgcaggccggtgacatcctcgcccgtgccagccgcgaagctgccaag
acccgcgacatcaccggcggtctgccgcgcgtggccgaactgttcgaagcgcgcatgccg
aaggacgtttcggtcatcgccaagatcagcggcaaggtcgaattcgtccgcgaatacaag
gccaagcgcaagatcgcgatcgtcccggaagagggtgatccggtggagtacctgatcgcc
aagaccaaggtgatcgacgtgcaggaaggcgacttcgtcaagaagggcgatacgctggtt
tcgggcagcccgaacccgcacgacatcctggaagtgctcggcgtggaagcgctggccgaa
tatctcgtcagcgagatccaggaggtctatcgcttgcagggcgtgaagatcaacgacaag
cacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatcaccgatggcggcgac
accacgctgctgccgggcgagcaggtcgactatgccgaaatgatggaaaccaatgccaag
cttgccccgcgcaagaagcatgcgcagggcaccccgatcctgctgggcatcaccaaggca
tcgctccagacccgcagcttcatctctgccgcgtccttccaggaaacgacccgcgtgctc
acgcaggcatcggtcgaaggcaagaaggactcgctgatcggtctcaaggagaacgtgatc
gtcggccgcctcatccccgccgggaccggtgcgggcatgaaccgcgtccgcgtgaccgcc
tccagccgcgacgccgcgctgcgcgcccagtatcgcaagatgcaggaagcgctggtgctg
gccgatacggccgaggaagagcacgaggccgaactggcacaggacgaggccgcggccatc
ggcgatacgccgatcggtgctgccgagggcgagagccacggtagcaacgaagatgccggc
gactacctgaccgaagaagccaaggaagaaggcagcgatgccgcttccgacgagccgacg
caggagccgaccgacggcgagtaa
DBGET
integrated database retrieval system
