Alteriqipengyuania flavescens: QQW98_07625
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Entry
QQW98_07625 CDS
T09518
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aflv
Alteriqipengyuania flavescens
Pathway
aflv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QQW98_07625 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aflv03400
]
QQW98_07625 (ligD)
Enzymes [BR:
aflv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QQW98_07625 (ligD)
DNA repair and recombination proteins [BR:
aflv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QQW98_07625 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WJY17533
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Position
1466017..1468473
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AA seq
818 aa
AA seq
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MAARKDLLAEYNAKRDFKHTPEPAGKRKASKAGDLFIVQKHDATRLHWDLRLEVDGVLKS
WAVTKGPSPDPDIKRLAVRTEDHPLSYAEFEGVIPKGEYGGGTVMLWDRGSWAPIEGKSA
KDLDKGHLHFTLQGERMRGEWLLIRLKKKPGEKRENWLLRKLQDDHAEAGDALVQRELTS
VATGRAMAEIAASKNAPRPKSGSTKPRARKAASLPQYRKPQLATLVDDVPTGNSWMHEIK
FDGYRALVAVRGKNVRIYTRNGMDWTDKFGPLVDAIAALDLPSALIDGEIVAYDDKGNPD
FSALQKVLKRGAGAQQPSDKLALHAFDILELEGEDLTDLPNIERKERLEALLATAQPPIH
VADHVLGAGDTLYRAMCEAAQEGIISKTVDGKYSGRRSKAWVKVKCTRRQEFVIIGWKAS
SAKGRPFASLLLAQHDGGELVYKGNVGTGFSADDLDDLAQKLKRLERKTQSAKVDKTASR
GVKWVTPKLVAEIAFAEFTADGNVRHGSFLGLRGDKPARNVVPEKAAPLPGKEDVAISSR
DRVIFPDSDQTKGDLADYYAAIAPIMLPFAAQRPVSLVRCPQGRGKKCFFQKHDSGAFGD
AVHHVPIREKDGGHEDYLYVEDLRGLLQCVQMGTIEFHGWAARSDEVEKPDRMIFDLDPD
EGLDFAKVKKAARDIHDRLADLGLTSFAMLSGGKGVHVVVPLTPGHSWEQHKDFARRFSE
ALSLAEPERFTASMSKAKRKDRIFIDWQRNQRGATAVLPYSARARSGAPVAVPVAWNELK
RMDSAKAFSIDQAEALLRRASSKALHGWGFADQRLPDI
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgcaaggatctcttggccgaatacaacgccaagcgcgatttcaagcatacg
cccgagcccgcggggaaacgcaaggcgagcaaggcaggcgaccttttcatcgtccagaaa
cacgacgcgacccggttgcactgggacctgcggttggaggtggacggggtgctgaagagc
tgggctgtcaccaaggggccttctcctgatcccgacatcaagcgcctcgcggtccggacc
gaggaccacccgctgtcctatgcggagtttgaaggcgtcattcccaagggggagtacggc
ggcggaaccgtcatgctgtgggatcgcggaagctgggcgcccattgaaggtaagagcgcc
aaggatctcgataagggccatctccattttacgctccaaggggaacgtatgcgcggcgaa
tggctcttgatccgtttgaaaaagaagccgggcgagaagcgcgaaaactggcttttgcgc
aagctgcaggatgaccacgccgaagcgggcgacgctctggtgcagcgcgaactgacaagt
gtggcgaccggtcgtgcgatggcggagattgcggcgagcaagaacgctccgcgacccaaa
tcaggttcgacgaaaccccgcgccagaaaagctgcgtcattgccccagtaccgtaagccc
cagcttgccacgcttgtcgacgatgtgccgacgggcaatagttggatgcacgagatcaag
ttcgacggctatcgtgcgctggtggcggtgcgtggtaagaacgtgcgcatctatacgcgc
aacggaatggactggacggacaagtttggccctctggtcgatgccattgctgcgctcgac
ttgccttcggcgctgatcgatggcgagatcgtggcctatgatgacaagggcaatcccgac
ttttcggcgttgcaaaaggttctgaaacggggggcgggagctcagcagccgtccgacaag
ctggctctccacgcgttcgatattcttgagctggaaggcgaggacctaactgaccttcca
aatatcgagcgcaaggaacggctcgaagccttgctcgccaccgcgcagccgccgatccat
gtcgccgaccacgtcctgggtgcgggcgacacgctgtatcgggcgatgtgcgaggctgcg
caggaaggcatcatttccaagaccgtagacggcaaatactccggacgtcggtcgaaggcc
tgggtcaaagtcaaatgcacccgccggcaggaattcgtcatcatcggctggaaggcgtcg
agcgcgaagggacgccccttcgcctcccttttgctggcccagcacgatggcggcgagctt
gtttacaagggaaatgtcgggacggggttttccgcggacgatctcgatgatctggcgcag
aagctgaaacggctggagcgaaagacccagtcggcgaaggtcgataagaccgcgtcgcgc
ggtgtgaagtgggtaacgcccaagctggtggcggagatcgcctttgccgaattcaccgct
gacgggaacgtgcgccacggcagttttcttggattgcgcggggacaagccagcgagaaac
gtcgtgccagagaaagctgctcccttgcctggaaaagaggacgtcgccatttcgagccgc
gaccgcgtcattttccccgacagcgatcagaccaagggggacctggctgattattatgcg
gcgattgcacccatcatgctgccatttgccgcgcagcgtcccgtcagccttgttcgctgt
ccccaggggagggggaagaagtgctttttccaaaagcacgacagcggcgctttcggcgat
gccgtccatcacgttccgatccgggaaaaggacggcgggcacgaggattacctctatgtg
gaggacctgcgcggacttctgcaatgcgtacagatgggcacaatcgagtttcacggctgg
gcggcgcggtcggacgaagtggagaagcccgaccggatgatcttcgatctcgatcccgac
gaggggctggattttgcaaaggtgaagaaggccgcgcgcgatatccatgaccggcttgcc
gacctcggccttaccagtttcgcgatgctttcaggggggaagggtgttcatgtcgtggtg
ccgctgacgccggggcatagctgggagcagcacaaggattttgcccgtaggttctccgaa
gcgctgagccttgccgagcccgaacgtttcaccgcgagcatgagcaaggctaagcgcaag
gaccgcatcttcatcgactggcagcgcaaccagcgcggcgcgacggcggtcttgccgtat
tcggcacgcgcaaggtccggcgcacccgtcgcagttcccgtggcatggaacgaactcaag
cggatggatagcgccaaagcgttttccatcgatcaggcagaagcgctgttgcggcgtgcg
tcgtcgaaagcactccatggctggggtttcgccgaccagcgccttccggacatttaa
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