KEGG   Alteriqipengyuania flavescens: QQW98_07625
Entry
QQW98_07625       CDS       T09518                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aflv  Alteriqipengyuania flavescens
Pathway
aflv03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aflv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    QQW98_07625 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aflv03400]
    QQW98_07625 (ligD)
Enzymes [BR:aflv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     QQW98_07625 (ligD)
DNA repair and recombination proteins [BR:aflv03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     QQW98_07625 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: WJY17533
LinkDB
Position
1466017..1468473
AA seq 818 aa
MAARKDLLAEYNAKRDFKHTPEPAGKRKASKAGDLFIVQKHDATRLHWDLRLEVDGVLKS
WAVTKGPSPDPDIKRLAVRTEDHPLSYAEFEGVIPKGEYGGGTVMLWDRGSWAPIEGKSA
KDLDKGHLHFTLQGERMRGEWLLIRLKKKPGEKRENWLLRKLQDDHAEAGDALVQRELTS
VATGRAMAEIAASKNAPRPKSGSTKPRARKAASLPQYRKPQLATLVDDVPTGNSWMHEIK
FDGYRALVAVRGKNVRIYTRNGMDWTDKFGPLVDAIAALDLPSALIDGEIVAYDDKGNPD
FSALQKVLKRGAGAQQPSDKLALHAFDILELEGEDLTDLPNIERKERLEALLATAQPPIH
VADHVLGAGDTLYRAMCEAAQEGIISKTVDGKYSGRRSKAWVKVKCTRRQEFVIIGWKAS
SAKGRPFASLLLAQHDGGELVYKGNVGTGFSADDLDDLAQKLKRLERKTQSAKVDKTASR
GVKWVTPKLVAEIAFAEFTADGNVRHGSFLGLRGDKPARNVVPEKAAPLPGKEDVAISSR
DRVIFPDSDQTKGDLADYYAAIAPIMLPFAAQRPVSLVRCPQGRGKKCFFQKHDSGAFGD
AVHHVPIREKDGGHEDYLYVEDLRGLLQCVQMGTIEFHGWAARSDEVEKPDRMIFDLDPD
EGLDFAKVKKAARDIHDRLADLGLTSFAMLSGGKGVHVVVPLTPGHSWEQHKDFARRFSE
ALSLAEPERFTASMSKAKRKDRIFIDWQRNQRGATAVLPYSARARSGAPVAVPVAWNELK
RMDSAKAFSIDQAEALLRRASSKALHGWGFADQRLPDI
NT seq 2457 nt   +upstreamnt  +downstreamnt
atggccgcgcgcaaggatctcttggccgaatacaacgccaagcgcgatttcaagcatacg
cccgagcccgcggggaaacgcaaggcgagcaaggcaggcgaccttttcatcgtccagaaa
cacgacgcgacccggttgcactgggacctgcggttggaggtggacggggtgctgaagagc
tgggctgtcaccaaggggccttctcctgatcccgacatcaagcgcctcgcggtccggacc
gaggaccacccgctgtcctatgcggagtttgaaggcgtcattcccaagggggagtacggc
ggcggaaccgtcatgctgtgggatcgcggaagctgggcgcccattgaaggtaagagcgcc
aaggatctcgataagggccatctccattttacgctccaaggggaacgtatgcgcggcgaa
tggctcttgatccgtttgaaaaagaagccgggcgagaagcgcgaaaactggcttttgcgc
aagctgcaggatgaccacgccgaagcgggcgacgctctggtgcagcgcgaactgacaagt
gtggcgaccggtcgtgcgatggcggagattgcggcgagcaagaacgctccgcgacccaaa
tcaggttcgacgaaaccccgcgccagaaaagctgcgtcattgccccagtaccgtaagccc
cagcttgccacgcttgtcgacgatgtgccgacgggcaatagttggatgcacgagatcaag
ttcgacggctatcgtgcgctggtggcggtgcgtggtaagaacgtgcgcatctatacgcgc
aacggaatggactggacggacaagtttggccctctggtcgatgccattgctgcgctcgac
ttgccttcggcgctgatcgatggcgagatcgtggcctatgatgacaagggcaatcccgac
ttttcggcgttgcaaaaggttctgaaacggggggcgggagctcagcagccgtccgacaag
ctggctctccacgcgttcgatattcttgagctggaaggcgaggacctaactgaccttcca
aatatcgagcgcaaggaacggctcgaagccttgctcgccaccgcgcagccgccgatccat
gtcgccgaccacgtcctgggtgcgggcgacacgctgtatcgggcgatgtgcgaggctgcg
caggaaggcatcatttccaagaccgtagacggcaaatactccggacgtcggtcgaaggcc
tgggtcaaagtcaaatgcacccgccggcaggaattcgtcatcatcggctggaaggcgtcg
agcgcgaagggacgccccttcgcctcccttttgctggcccagcacgatggcggcgagctt
gtttacaagggaaatgtcgggacggggttttccgcggacgatctcgatgatctggcgcag
aagctgaaacggctggagcgaaagacccagtcggcgaaggtcgataagaccgcgtcgcgc
ggtgtgaagtgggtaacgcccaagctggtggcggagatcgcctttgccgaattcaccgct
gacgggaacgtgcgccacggcagttttcttggattgcgcggggacaagccagcgagaaac
gtcgtgccagagaaagctgctcccttgcctggaaaagaggacgtcgccatttcgagccgc
gaccgcgtcattttccccgacagcgatcagaccaagggggacctggctgattattatgcg
gcgattgcacccatcatgctgccatttgccgcgcagcgtcccgtcagccttgttcgctgt
ccccaggggagggggaagaagtgctttttccaaaagcacgacagcggcgctttcggcgat
gccgtccatcacgttccgatccgggaaaaggacggcgggcacgaggattacctctatgtg
gaggacctgcgcggacttctgcaatgcgtacagatgggcacaatcgagtttcacggctgg
gcggcgcggtcggacgaagtggagaagcccgaccggatgatcttcgatctcgatcccgac
gaggggctggattttgcaaaggtgaagaaggccgcgcgcgatatccatgaccggcttgcc
gacctcggccttaccagtttcgcgatgctttcaggggggaagggtgttcatgtcgtggtg
ccgctgacgccggggcatagctgggagcagcacaaggattttgcccgtaggttctccgaa
gcgctgagccttgccgagcccgaacgtttcaccgcgagcatgagcaaggctaagcgcaag
gaccgcatcttcatcgactggcagcgcaaccagcgcggcgcgacggcggtcttgccgtat
tcggcacgcgcaaggtccggcgcacccgtcgcagttcccgtggcatggaacgaactcaag
cggatggatagcgccaaagcgttttccatcgatcaggcagaagcgctgttgcggcgtgcg
tcgtcgaaagcactccatggctggggtttcgccgaccagcgccttccggacatttaa

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