Alteriqipengyuania flavescens: QQW98_10870
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Entry
QQW98_10870 CDS
T09518
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aflv
Alteriqipengyuania flavescens
Pathway
aflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QQW98_10870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aflv03019
]
QQW98_10870
03009 Ribosome biogenesis [BR:
aflv03009
]
QQW98_10870
Enzymes [BR:
aflv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QQW98_10870
Messenger RNA biogenesis [BR:
aflv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QQW98_10870
Ribosome biogenesis [BR:
aflv03009
]
Prokaryotic type
rRNA processing factors
QQW98_10870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
WJY18119
LinkDB
All DBs
Position
complement(2105315..2108149)
Genome browser
AA seq
944 aa
AA seq
DB search
MATRMLIDARHPEETRVAVQQGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPKDDRDRLLAEEAEAAAEEAALRDSDDDIVDEPEDDESG
EALADDLAGEELEEIDTSEKDDVATIEEGHVDGASDDDDDGDDEDDSEDSDESDDKSRGR
GRRGRGRRQGKGSGKQGGKAKKADEVRAKRLNLRRRYKIQDVIQRRQVLLVQVVKEERGN
KGAALTTYLSLAGRYTVLMPNSSHGGGISRKISSASDRKRLKQIVGDLSLPKSMGLIVRT
AGLSRTKTEIKRDFDYLARLWDEIRERTMASSAPAQIHSDSDLIKRAIRDIYNREIEEVL
VEGDEGYKSAKAFMKLLMPSHARRVKQYADPVPLFQRYGAEDQLKAMYDPVVQLKSGGYL
VINPTEALVSIDINSGRSTKEHGIEATATATNLEAAKEIARQLRLRDMAGLVVIDFIDME
YNSNVRKVERCMKDALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEATTRECPHCDGTG
LVRTASSAGLSALRLIEDEAAKGKGTTIKLAASTEAAVYLLNEKRADLVEIEQRYGVSVE
VVPEGEDEGAKMSVSSHGPKPANRPTFEAIIDDDDEDEVAEDSYEDDSDERQGNRKRRRR
GGRGRNKKRGSDGDDRNDADEDSDNARSDEGDKDGDSDDDNGEGKPRKRRRRGGRGRRGR
GGRGAGENRGDDTEVTAQDAANLDAVSEQMVADIPVASGPDDMPVDPEEAAEKDEKPKKR
RSRAKKADTHGDAPATDENAEDVPKPKRKSRARKADTDEAAKAADAAPKPKRASRAKKAE
DAEAPEAEAEKPKRKPRAKKAAATDDTPEADAKPKRSRAKKADAVAGDKPALAKVLSGED
TVPSGDAAGKADEAKADEAKLSDAKPDNDDAPRRGGWWQRTFGN
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgctaatcgatgcgcgccacccggaagaaacccgggtggcggttcag
caaggtaaccggattgaggaattcgatttcgaatctgccgaacacaagcagatcaagggc
aatatctaccttgccaaggtaaccagggtcgaacccagcctgcaggcggcattcgtcgat
ttcggcggcaaccggcacggtttcctcgccttcagcgaaatccaccccgattactaccag
atccccaaggacgatcgcgatcgcctgctggccgaagaggccgaggccgcagccgaggaa
gcagccctgcgcgatagcgacgacgacatcgtcgacgagccggaagacgacgagagcggc
gaagccctcgccgacgatcttgccggggaagagctcgaagaaatcgacacgtcggaaaag
gacgacgtcgccacgatcgaggaaggccatgtcgatggtgcttccgacgacgacgacgat
ggcgacgatgaagacgacagcgaagacagcgacgagagcgacgacaagtcgcgcggtcgc
ggccgccgcggtcgcgggcgccgtcagggcaagggctccggcaagcagggcggcaaggcc
aagaaggccgacgaagttcgcgccaagcgcctgaacctgcgccgccgctacaagatccag
gacgtcatccagcgccggcaggtgctgctggtccaggtcgtgaaggaagagcgcggcaac
aagggcgcggcgctcaccacctacctcagcctcgccgggcgctacaccgtgctgatgccg
aacagcagccacggcggcggcatcagccgcaagatcagctccgccagcgaccgcaagcgg
ttgaagcagatcgtcggcgatctcagcctgccgaagtcgatgggcctgatcgtgcgcacc
gccggcctcagccgcaccaagaccgagatcaagcgcgacttcgactatctggcccgcctg
tgggacgagatccgcgaacgcaccatggcatccagcgcgccggcgcagatccattcggac
agcgacctcatcaagcgcgcgatccgcgacatctacaatcgcgagatcgaggaagtgctg
gtcgaaggtgacgagggctacaagtccgccaaggccttcatgaagctgctgatgccgagc
catgcccggcgcgtgaagcagtatgcggatcccgtgccgttgttccagcgctatggcgcg
gaagaccagctgaaagcgatgtacgatcccgtagtgcagctgaagtcgggcggctatctc
gtcatcaacccgaccgaggcgctggtgtcgatcgacatcaactccggccgctccaccaag
gaacacgggatcgaggcaaccgcgacggcgaccaacctcgaagcggccaaggaaatcgcc
cgccagctgcgcctgcgcgacatggccgggctggtcgtgatcgacttcatcgacatggag
tacaactccaacgtccgtaaggtcgaacgctgcatgaaggacgcgctgaagaacgaccgc
gcccggatccaggtgggccgcatctccagcttcggcctgatggaaatgagccgccagcgc
ctgcgcaccggcgttctggaggcgacgacccgcgaatgtccgcattgcgacggcaccggc
ctcgtccgcaccgcatccagcgccggcctttccgcgttgcgcctgatcgaggacgaagcg
gccaagggcaagggcaccacgatcaagctggctgccagcaccgaagcggcggtctacctg
ctcaacgagaagcgcgccgacctggtcgagatcgaacagcgttatggcgtcagcgtggaa
gtcgtgccggaaggcgaggacgaaggcgcgaagatgagcgtgtccagccacggtcccaag
cccgccaaccgccccacgttcgaagccatcatcgacgatgacgacgaggacgaagtcgcc
gaagacagttacgaggacgacagcgacgagcgccagggcaaccgcaagcgccgtcgccgt
ggcggtcgcggccgcaacaagaagcgcggctccgacggcgacgatcgcaacgatgccgac
gaagacagcgataacgcccgttccgacgaaggcgataaagatggcgacagcgacgacgat
aacggcgaaggcaagcccaggaagcggcgtcgccgtggcggccgtggccggcgcggtcgc
ggtggtcgcggcgcgggcgagaaccgcggcgacgacaccgaggtgacggcacaggacgcc
gccaatctcgatgccgtgtcggagcagatggtcgcggacatcccggtcgcttccggcccg
gacgacatgccggtcgatccggaagaggctgccgaaaaggacgagaagccgaagaagcgc
cgcagccgcgcgaagaaggccgacacacacggcgatgcccccgcaacggacgaaaacgcg
gaagacgtgccgaagcccaagcgcaagtcgcgggccaggaaggccgatacggacgaagct
gccaaggctgccgatgccgctccgaagcccaagcgcgcctcgcgtgcaaagaaggccgaa
gatgccgaggctccggaagccgaagccgagaagccgaagcgcaagccgcgggcgaaaaag
gccgccgccaccgacgacacgccggaagcggacgccaagccaaagcggtcgcgtgcgaag
aaggccgatgcggtggccggtgacaagcctgccctcgccaaggtcctctcgggcgaggat
acggttccttcgggcgatgcggccggcaaggccgacgaagccaaggccgacgaagccaag
ttaagcgatgccaagccggacaatgacgacgcgccccgccgcggcggctggtggcagcgc
accttcggcaactga
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