KEGG   Pseudoblastomonas flavescens: QQW98_11040
Entry
QQW98_11040       CDS       T09518                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
aflv  Pseudoblastomonas flavescens
Pathway
aflv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aflv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    QQW98_11040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aflv03019]
    QQW98_11040
Messenger RNA biogenesis [BR:aflv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     QQW98_11040
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B RMMBL Lactamase_B_2 RNase_J_C Anti-Pycsar_Apyc1 DUF6950
Other DBs
NCBI-ProteinID: WJY18153
LinkDB
Position
2141033..2142679
AA seq 548 aa
MKTDYTPENELLFLALGGSGEIGMNVNLYGCDGKWLMVDCGMTFSGGEYPGVDLVFAEID
FIEDRRDDLLGIVLTHAHEDHIGALPYFAEELGVPLYATPFTADLIERKLQEAGIAGDIE
LNIIPDDHGNFDLGPFSITYIPLAHSIAEGNALLVDTPYGRIFHTGDWKLDEEPVIGEPA
TEEELQDIGDEGVLALVCDSTNVFNPNPSGSEGAVYRGLLDEVRKHSGKRVLVTTFASNV
ARLQTLGAVAEETGRKLVVAGRSLDRMIDAAQNNGYLEDLPDIVDFDTAMSLPRGEVMII
ATGGQGEPRAALSRIAEENHPLELTRGDVVLFSSRQIPGNEISIGKVQNRLAERGIVMIT
DRQSMIHVSGHPGRPELEALYSWLRPDILVPVHGERRHMEEQARLGLASGIEHNVVQSNG
DIVRLAPGRPGRIGQIETGRLVLDGDMIVPANGEAITMRRRMAADGVLLVALFNHGPQIE
GIGLPLDEDYDAFIDEAKADVTKALAKLKGAARRDRDQISETARLAARRCAQRWTGKKPQ
TRVMLPEG
NT seq 1647 nt   +upstreamnt  +downstreamnt
atgaaaacagattacacgccggaaaacgaacttctcttcctcgcgctgggcgggtcgggc
gagatcggtatgaacgtcaacctgtacggctgcgacggcaagtggctgatggtcgactgc
gggatgactttcagcgggggcgaatatcccggcgtcgacctcgtgttcgccgaaatagac
ttcatcgaggaccgacgcgacgacctgctcggcatcgtcctcacccacgcgcacgaggac
cacatcggggcgctgccgtactttgcggaagagctcggcgtgcctctctatgccacgcct
ttcaccgcggacctgatcgagcgcaagctgcaggaagccggcatcgcgggcgatatcgaa
ctcaacatcatccccgacgatcatggcaatttcgacctgggcccgttcagcatcacctac
atcccgcttgcccactcgatcgcggaaggcaacgcgctgctagtcgatacgccttacggc
cgcatcttccacacgggggactggaagctggacgaggagccggtgatcggcgagccggcg
accgaagaagaactgcaggacatcggcgacgagggtgtgctggcgctggtgtgcgattcc
accaacgtcttcaacccgaacccttctggcagcgaaggcgcggtctatcgcggcctgctg
gacgaggtgcgcaagcattccggcaagcgcgtgctcgtcacgaccttcgcttccaacgtg
gcgcggttgcagacgctcggcgcggtggcggaggaaacggggcgcaagctcgtcgtcgcc
gggcgctcgctcgaccggatgatcgatgcggcgcagaacaacggctatctcgaagacctg
cccgacatcgtcgatttcgacaccgcgatgtccctgccgcgcggcgaggtcatgatcatc
gcgaccggcgggcagggcgaaccgcgcgccgccttgtcgcggatcgctgaggagaaccac
ccgctcgagcttacgcgcggcgacgtggtgctgttttccagccgccagatcccggggaac
gagatttccatcggcaaggtgcagaaccggcttgccgagcgcgggatcgtgatgatcacc
gaccggcagagcatgatccacgtgtccggccatcccggccggcccgagctggaagcgctc
tattcctggcttcggcccgacatcctggtgcccgtccatggcgagcggcggcacatggag
gaacaggcgcggctgggcttggcatcgggcatcgagcacaacgttgtgcaatccaacggc
gacatcgttcgcctcgcaccgggccggccgggccggatcgggcagatcgaaaccgggcgc
ctcgtgctggatggcgacatgatcgtgcccgccaacggcgaagcgatcaccatgcgacgc
cggatggcagccgatggcgtgctgctggttgccttgttcaaccacggcccgcagatcgag
ggcatcggcctcccgcttgacgaggattacgacgccttcatcgacgaggcgaaggccgat
gtgaccaaggcgctcgccaagctgaagggcgcggcccgccgcgaccgtgaccagatcagc
gagacggcacgcctcgccgcccgccgctgcgcccagcgctggaccggcaagaagccccag
acgcgcgtgatgctgccggaggggtag

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