Aspergillus fumigatus: AFUA_2G10000
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Entry
AFUA_2G10000 CDS
T01017
Name
(RefSeq) DEAD/DEAH box RNA helicase (Ski2)
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
afm
Aspergillus fumigatus
Pathway
afm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFUA_2G10000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afm03019
]
AFUA_2G10000
Enzymes [BR:
afm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AFUA_2G10000
Messenger RNA biogenesis [BR:
afm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
AFUA_2G10000
mRNA degradation factors
3'-5' decay
Ski complex
AFUA_2G10000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
3513188
NCBI-ProteinID:
XP_755333
UniProt:
Q4X1H0
LinkDB
All DBs
Position
2:2559514..2563680
Genome browser
AA seq
1293 aa
AA seq
DB search
MAETVASILVDLNLKTENLSGSAFDAQLAEEEKGSYRHRGPRQRPRQSASDLKDELEKEI
LTPSPRFSPEWLNRLQKRWDVPVNYTDLYEIAPTQTRTIVRFTREGLEGRVTGYHEVTVP
AAAANAKNSTSLLRRPAGRADFVRGAAGFFPFAPGGLDGVEAIAEMESEAQAAERSKTGG
KQSGLDRIINFGAEGGLLEIAPGCSRGLQFEATKTKETAEGDEEVEHALQQEESDLHVER
DEDVMSDVEGGVKIGEDDELSGEEDIDSLLPVEFPALEPRAPLLSGVKQRQGGKEWAHVV
DVNKHISNFHELVPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIA
LASKHMTKAIYTSPIKALSNQKFRDFRTEFDDVGILTGDVQINPEASCLIMTTEILRSML
YRGADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWV
GRTKKKDIYVISTAKRPVPLEHYLWAGKDKYKIVDSNKRFLETGWKEADNVISGRDKIKA
QKAAEAQAQSQAQRGGQQGRGRGQPTGRGAPRGNAQRGGAPRGRGQPANRGTGNIARTGR
GGGRTTAAQDKTIWVQLVGHLRKENLLPGCIFVFSKKRCEENADSLSNQDFCNASEKSLI
HMFIEKSLTRLKPEDRILPQILRLRELLSRGIAVHHGGLLPIMKEIVEILFAKSLVKILF
ATETFAMGLNLPTRTVVFSGFRKHDGRGFRDLLPGEYTQMAGRAGRRGLDTVGYVIIVSA
GRDEAPPAGALRKMILGDPTKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSENATQAL
LPEHEKQVQLSEASLAKIKREPCDICDIDLVACHDAAIEYEKLTSELHVGLLASPVGKRL
FMPKRLVVYRKDGFRTAGIIVREGVGGGATPNIQVLEIGKLSHRRHPSDILPFLPRFRHL
LHPLPTRAADMTLKVCKIPLSDLECVTNTIVKVGGPTWYLNIKKEAIKFADKELSKLCAS
WTSPIWDEMDWARIKELQVRDILEKRQAQAAITQSCRCLQCPSFMKHFEMQHDEWQVKEN
ISQLKQLMSDQNLQLLPDYEQRIQVLRDLGFIDEQSRVQLKGKVACEIHSADELVLTELI
LENVLAEYEPEEIVALLSAFVFQEKTENVPTLTPRLEKGKEAIIRIAEKVNDLQIQYQVI
QSSEDSNDFASQPRFGLAEVVYEWAKGMSFNRITDLTDVMEGTIVRTITRLDETCREVRN
AAKLVGDPTLYAKMQHAQELIKRDVIFAASLYM
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaacggtggcctccatcttggtcgacctgaacctcaagaccgagaatctaagc
gggtctgccttcgatgctcagcttgctgaagaggaaaagggatcttacagacaccgtggc
cctcgacagcggccacggcagagtgcctcagatctcaaagatgaattggagaaagagatt
ttgacaccctcaccacgatttagcccagaatggctcaaccgccttcaaaagcgatgggat
gtcccggttaactacaccgacctctatgagattgctcccactcaaacgcggactattgtt
cgtttcacccgggaaggtctggagggtcgagtcactggttatcacgaagtcactgtcccc
gctgcggcggccaacgccaaaaactcgacgtctctgctgcgcaggcctgcaggtcgtgct
gactttgtgagaggcgcggcaggattcttcccatttgcgccgggcggactcgacggtgtt
gaggctattgctgaaatggaatctgaagcacaggctgcggaacgctcaaaaaccggtggc
aaacagtccggcctcgaccgcattatcaattttggagctgagggtggtctcttggagata
gcccctggctgttcccgtgggttgcaattcgaagcgactaagaccaaggaaacagcggaa
ggtgacgaggaagttgagcatgccctccagcaagaagaaagtgatctccatgtggagcga
gatgaagacgtcatgtcggacgttgaaggtggggtgaagattggcgaggatgatgaattg
agtggcgaggaggatatcgattctctactccctgtcgagttcccagccttggagccccga
gcgccgttactcagtggtgtcaagcaaaggcagggtggcaaagaatgggctcacgtcgtc
gacgtcaataaacacatctctaacttccatgaactcgtacctgacatggctcgggagtgg
ccgttcgaactggataccttccagaaggaggctgtgtatcacctcgaaaatggcgattca
gtctttgtcgcggctcatacctcagccggtaagactgtcgttgcagaatacgctatcgca
ctggcctcgaaacatatgaccaaggcgatttacacatctcctatcaaagcactgagcaat
caaaaattcagagacttcagaactgagtttgatgacgtcgggattcttaccggagatgtc
caaatcaacccggaggctagctgcctgatcatgactaccgagatcttgcggagtatgctc
taccgaggcgcggatctgatcagagatgttgaatttgtgatctttgacgaggtgcactat
gtgaatgatctcgagcgaggtgttgtttgggaggaggtcatcatcatgcttccggagcat
gtcactctcattctgctctctgctacagtccccaatacctatgaatttgcctcctgggtt
ggtcgtacgaagaagaaggatatttacgtcatatcgaccgccaaacggcccgtcccactg
gagcactatctctgggcaggtaaagacaagtacaagattgtcgactcgaacaagcgcttt
ctcgagactggctggaaagaagcagacaacgtcatttccggcagagacaaaataaaagca
caaaaggcggccgaagctcaagctcagtctcaagcacagcgcggaggacaacaaggcaga
ggccgtgggcagcctactggtagaggagctcctcgtggaaacgctcagcggggcggtgct
cctcgtggcagaggccagcctgctaacaggggcactggcaatatcgcccgtacgggacgg
ggtggaggacgcacaacggctgctcaggataagacaatctgggtacagctcgtggggcac
ctccgaaaagagaacttgctcccaggctgcatcttcgttttctcgaaaaaaagatgtgaa
gagaatgcagactcactgtccaatcaggatttctgcaatgcttccgagaagagtttgatt
catatgttcatcgagaagtccctgacacgactcaagccagaagacagaattctgccacaa
attcttcggctgcgggagctgctaagcagaggtatcgctgttcaccatggtggtcttctg
ccaatcatgaaagaaattgtggaaattttgttcgcaaaatcgttggtcaagattcttttc
gctaccgagacttttgcgatgggtctcaatctgcccacacggacggtcgttttctctggg
ttccgcaagcacgacggtaggggctttagagatctcttgccaggcgagtatactcagatg
gcaggacgtgcaggacggagaggtcttgacactgttggatacgtcatcatcgtgagcgct
ggtagagacgaggcacctcctgcgggtgctttgagaaagatgatccttggtgacccgaca
aaactccggtcccagttcagactcacttacaatatgattctgaatctcttgcgtgtggaa
gctctgaagatcgaagagatgatcaagcgaagtttcagtgagaatgccactcaggctctg
ctgccggagcatgagaaacaggtacagctttctgaagcaagtctggcgaagataaaacga
gaaccttgcgatatctgcgatattgacctggtagcctgccatgatgcagctatcgagtat
gagaagctaacgagcgaacttcacgttggtctgcttgcctctcctgtagggaagcgtctt
ttcatgccaaagcggcttgttgtgtatcgaaaggatggtttccgaactgcgggtatcatt
gttagagaaggtgttggaggaggtgccactcctaacatacaggtccttgagatcggcaaa
ttgagccacagacgccatccaagcgacattttgcccttccttccaagattccgacacttg
ctgcaccctctgccgactcgtgctgccgatatgacgctaaaagtttgcaagattcctctt
tcagacctagagtgtgttacgaacacgattgtgaaagtgggtggtccaacatggtacctg
aatattaagaaagaggcgattaaattcgcggacaaggagctttcgaaactttgcgcttcc
tggactagccctatctgggatgagatggactgggctcggatcaaagagctacaagtgcgg
gacatattagaaaaacggcaagcacaggcagctatcactcaatcatgccgttgcttacag
tgcccgtctttcatgaagcacttcgagatgcagcacgatgaatggcaggtgaaggagaat
atctctcagctaaaacagctcatgtcggaccaaaacctgcaactactaccggactacgag
cagcgtatccaagttctaagagacctagggttcattgatgagcaatctcgagttcaactg
aagggcaaagtcgcatgtgagattcactcggctgatgagctggtgctgacggaattgatt
ctggagaacgtcctggccgaatacgagcctgaagaaattgttgcgctcttgtccgcattt
gtcttccaggagaagacagagaacgtacctactttgacccctcgcctggagaagggcaag
gaggcgattattcggatcgccgagaaggtaaacgacctccaaatccaatatcaggtcatt
cagtctagcgaggacagcaacgacttcgccagccagccccgctttggtctggcggaggta
gtttacgaatgggccaagggcatgtccttcaaccgcatcacagacttgacggatgtgatg
gaaggtaccattgttcggacgattactcgactagatgagacttgtcgcgaagtgaggaac
gcggcgaagctggttggagatccgacgttgtacgcgaagatgcaacatgcgcaggagctg
atcaagcgcgatgtcatctttgcagcatctttgtacatgtag
DBGET
integrated database retrieval system
