Aspergillus fumigatus: AFUA_2G13130
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Entry
AFUA_2G13130 CDS
T01017
Name
(RefSeq) 3' exoribonuclease family protein (Rrp42)
KO
K12589
exosome complex component RRP42
Organism
afm
Aspergillus fumigatus
Pathway
afm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFUA_2G13130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afm03019
]
AFUA_2G13130
Messenger RNA biogenesis [BR:
afm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AFUA_2G13130
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
AFUA_2G13130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
3513032
NCBI-ProteinID:
XP_755645
UniProt:
Q4X0K8
LinkDB
All DBs
Position
2:complement(3370665..3371926)
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AA seq
390 aa
AA seq
DB search
MSAQRQASSASQTPHLSPAELSYLYTSLALPDSPIRPDGRSPTQFRPLTAETDILPGTNG
SARVGFADGTQAIVGVKAEVEKTALAADALKVSQLSSGDDYTADQGADGKEGMGAAGGHE
SWVQISIEIPGFRDDDALPVFLSEMMREPLIESVSSAQGGDVEMAGGLKGRLVINRRWHW
RLYIDVLLLSQPLSYPLPLLSLTTHLALLSTRLPKLKSKGEEDPFFDDDWNVAEYLYPRQ
SSGNATTPSPSQFVRPPVTLLVISVADNIIFDPSREEIAVADTVLALSVSRDGETGSLKL
ISMRTIDPPSRLTQPGVPNSENVTTIGSSAAAEDAAILSPSTGEEEVPGVWKPRRGGVKR
STIARMVKAVLEKGGVGEDVLEGLEGVSVG
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcccagcgacaagcctcatctgcctcacagaccccacacctctcaccagcagaa
ctttcctacctctacacctcgcttgcgcttcccgacagtcccattcgaccagacgggcgc
tctcccacacagttccgacccttaacagcggagaccgacatcctcccgggcaccaatggc
agcgcgcgggtcggattcgcagacggcactcaagccatcgtcggagtgaaagcggaggtg
gagaagacagccctggcggcagatgccctgaaggtctcacaattgtcatcgggggatgat
tacacggctgatcaaggcgcggacggcaaggaagggatgggcgcagcgggcgggcacgaa
tcgtgggtgcagatctccattgagattcctggttttcgggacgatgatgccttgcctgtt
ttcctgtcggagatgatgcgggagccgctgattgagtcggtgtcaagtgcgcagggaggg
gatgtggagatggctggcggtctgaagggaaggctggtcattaaccgtcggtggcattgg
aggttgtatattgatgttctgctgctctcgcagcctctgtcatacccacttcctttactc
tctctgacgacgcacctggcgcttttgtcgacgcgactgcccaaactgaaatccaagggc
gaagaggacccgttcttcgacgatgattggaacgtagcggaatatctctaccctcgtcag
agctctgggaatgctaccacaccctcaccttcacagttcgttcgacctccagtgacgctg
ctggtcatctctgtggccgataacatcatcttcgatcccagcagggaggagattgccgtt
gcagataccgtcttggccctttcagtcagccgcgatggcgagactggtagtctgaaattg
atctctatgagaacaattgaccctccatctcgtctgacacagccgggtgtgccgaattcg
gagaatgtcactacgatagggtcttcggctgctgcagaggatgctgctatcctgagccct
tccaccggcgaggaggaagttcctggagtctggaagcctcgacgtggcggggttaaaaga
agtacgatcgcgcgcatggtgaaagcggtgctggagaagggtggtgtcggcgaggatgta
ctagagggactagagggagtttccgtcggttga
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