Aspergillus fumigatus: AFUA_4G07160
Help
Entry
AFUA_4G07160 CDS
T01017
Name
(RefSeq) ATP dependent RNA helicase (Dob1)
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
afm
Aspergillus fumigatus
Pathway
afm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFUA_4G07160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afm03019
]
AFUA_4G07160
03041 Spliceosome [BR:
afm03041
]
AFUA_4G07160
03009 Ribosome biogenesis [BR:
afm03009
]
AFUA_4G07160
03016 Transfer RNA biogenesis [BR:
afm03016
]
AFUA_4G07160
Enzymes [BR:
afm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AFUA_4G07160
Messenger RNA biogenesis [BR:
afm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
AFUA_4G07160
Spliceosome [BR:
afm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
AFUA_4G07160
Complex C
U4/U6.U5 tri-SnRNP related factors
AFUA_4G07160
Ribosome biogenesis [BR:
afm03009
]
Eukaryotic type
Pre-60S particles
Helicases
AFUA_4G07160
Transfer RNA biogenesis [BR:
afm03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
AFUA_4G07160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
3509577
NCBI-ProteinID:
XP_752110
UniProt:
Q4WNW2
LinkDB
All DBs
Position
4:1855415..1858962
Genome browser
AA seq
1082 aa
AA seq
DB search
MDELFDVFEDQPQAAAKVTDVAPKRPKKDKSKKRQVNGDVKENGAATEPKEDIEIPDAPT
GELADGEQAEAPATENNEQQPDAKRPRLEKEPQPVLADEFETAQEREVAASAGLQAAKET
TSVKLSHQVRHQVAIPPNYPYVPISQHKPPENPARVWPFTLDPFQQVAVASIQREESVLV
SAHTSAGKTVVAEYAIAQSLKNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTIN
PTATCLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMRDAIRGVVWEETIILLPDKVRY
VFLSATIPNAMQFAEWIVKMHNQPCHVVYTDFRPTPLQHYFFPAGGEGIFLVVDEKGAFR
EENFQKAMGSIADKKGDDPSDAMAKRKGKGKDKRLNKGGNEGPSDIYKIVKMIMLKNLNP
VIVFSFSKRECEACALKMSTLAFNDDSEKEMVSKVFNSAIEMLSEEDRNLPQIQNILPLL
RRGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGFS
QRWVTPSEFVQMSGRAGRRGLDDRGIVIMMVGEEMDPAVAKEIVRGEQDRLNSAFHLGYN
MILNLMRVEGISPEFMLERCFYQFQNTAGVADLEKQLQEFEEKRANMTIPDEGTIREYYE
LRTQLDKYADDIQAVISHPDYSLPFMLPGRLVHIKHKDKDFGWGVVVNYKQRKPPKNSTE
EIPRDKRYVVDVLLNIAEGPSVATKTFEELPSGVRPVKEGENSRMEVVPVLTECIRAISH
IRMKLPKDLNPKEAKNGVKKSLAEIHKRFPDGIATLDPIEDMNIKDESFKKLLRKVEVLE
SRLLSNPLHNSPRLPELYEQYSEKVELGTKIKETKKKISEAMSIMQLDELKCRKRVLRRF
GFINEAEVVQLKARVACEISTGDELMLSELLFNGFFNKLTPEQIAAVLSVFVFEEKSKET
PALTRDELAKPLKEIQAQARIVAKVSQESKLAVNEEEYVNSFHWELMEVIYEWANGKSFA
DICGMTDVYEGSLIRVFRRLEECLRQMAQASKVMGNEELESKFEEALTKVRRDIVAAQSL
YL
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggatgaactctttgatgttttcgaagaccagcctcaagcggcagccaaggtcaccgat
gtcgcacccaagcggcccaagaaggacaagagcaagaagcgtcaggtaaatggcgatgtg
aaggaaaatggcgcagcgacagagcccaaggaggatattgagattcccgatgcgccaact
ggagaactcgcggatggggaacaggctgaagcgcctgcgaccgagaacaacgagcaacag
cctgatgcgaaacgtccacgactggagaaggaaccgcaacctgtattagcagacgaattc
gagacggcgcaggagcgtgaggttgcagcatctgcaggtctacaagccgcaaaggaaaca
acttcggtcaagttgtcgcaccaggttcggcatcaagtcgccattccgcccaactatcca
tatgtaccaatctcgcaacacaagccgcctgagaaccctgcgagggtatggccgttcacg
ctcgatccgttccagcaagttgccgttgcatccatacagagagaggaaagtgttctagtc
tcggctcataccagtgccggtaagacggtagttgcggagtacgccatcgcgcaaagtctg
aagaacaaccaaagagtcatctacacaagtcctataaaggctttaagtaaccaaaaatac
cgagagtttgcggcagaatttggggatgttggtttaatgacaggagatgtcactatcaac
ccaacagcgacctgtctggtcatgacaacagagattctcaggtccatgttgtaccgcggt
tcagagattatgcgcgaagttgcatgggtcatttttgacgagattcattacatgcgtgat
gccattcgaggcgtggtttgggaagagactatcatcttgctaccggacaaggtcagatat
gtattcttgtcggcgacaattcccaatgctatgcagttcgccgaatggatcgtcaagatg
cacaaccaaccctgccacgtcgtatatactgatttcagacctactcctctacaacactac
ttcttccccgcgggtggcgaggggatcttcctcgtcgttgacgaaaaaggagcgttccgc
gaagagaacttccaaaaggcaatgggcagtatcgcagacaagaagggagatgacccgtcc
gatgctatggccaagaggaagggaaagggtaaagacaagaggttgaataagggcggaaat
gaaggcccgagcgacatttacaagatcgtgaaaatgatcatgctgaagaacctcaatccc
gtcattgtcttcagtttcagcaaacgtgaatgcgaggcatgcgctctcaagatgagtact
ttggctttcaatgatgattcggagaaggaaatggtatccaaggttttcaacagcgctatc
gagatgctttccgaagaagacaggaatctgcctcaaattcaaaacattcttcctctgctc
cggagaggtatcggtgtccaccattctgggttgcttcctattctcaaagagaccattgag
attctcttccaagaaggacttatcaaggtgctcttcgcgacagaaacattctcaatcggt
ctgaacatgcctgcgaagactgtagttttcacgagcgtccggaaatttgacggttttagc
caacgctgggtaacgccgtccgaattcgtccagatgtctggccgagctggtcgaagaggt
cttgatgaccgcggtatcgtgatcatgatggttggtgaagagatggatcctgcggtggcg
aaggagattgtgcgtggagagcaggataggctcaactcggctttccatttgggttacaat
atgatactgaacctgatgcgtgtggaaggcatctcgcccgagttcatgctcgagagatgc
ttctaccaattccaaaacacggctggtgttgccgaccttgagaaacaactccaggaattt
gaagaaaagagggccaacatgaccattcctgacgaaggcaccattcgcgaatactacgaa
ctaaggacgcagctcgacaagtatgcagatgacatacaggcagtcatcagccacccagat
tattctttgccatttatgttaccaggtcgtttagtgcacatcaagcacaaagacaaagac
ttcggatggggtgtggttgtcaattacaagcaacggaagccaccaaagaattcaacggag
gagattcctcgtgacaagaggtatgtcgtcgatgttttgctcaatattgccgaagggccg
tctgtggccacaaaaacgtttgaggagttaccgtcgggagtcaggccagtgaaagaaggg
gaaaactctcggatggaggtcgttccagtccttaccgaatgcatccgtgccatctcgcat
atacgcatgaaacttcccaaagacctgaacccaaaagaggcgaaaaacggcgttaagaaa
tctcttgctgagatccataagcggttccctgatggcattgctacacttgacccgattgag
gatatgaatatcaaggacgaaagtttcaagaaactactcaggaaagtggaggtcctcgag
tctcgtttgctttccaacccactgcacaactcaccccgcctaccagaactttatgagcaa
tattccgagaaggtagagttggggacgaagataaaggagacgaagaagaagatttccgag
gctatgtccatcatgcagcttgatgagctcaagtgccgtaagcgggtacttcgtcggttc
ggtttcatcaacgaggccgaagtcgtgcagttgaaggcacgagtcgcctgcgagatcagc
acgggagatgagctcatgctcagcgagcttcttttcaacggtttcttcaacaaacttact
ccggaacagatcgctgctgtattgagtgtattcgttttcgaggagaagtccaaagaaact
cctgctctcacgcgggacgagctggcgaagcccctaaaggaaatccaagcgcaggcccgg
atagttgccaaggtctctcaagaatccaagctggctgtgaacgaggaggaatatgtaaac
agtttccactgggagcttatggaggtcatctacgaatgggcgaacggcaagtcctttgct
gatatctgtggaatgaccgatgtttatgaaggatccttgatccgggtcttccgtcgattg
gaggagtgtctccgtcagatggcacaagcctccaaggttatgggtaatgaggaactcgag
agcaaatttgaggaagctctgactaaggtgcgcagggacattgtggccgcacagtccctg
tacttgtaa
DBGET
integrated database retrieval system
