Aspergillus fumigatus: AFUA_8G04420
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Entry
AFUA_8G04420 CDS
T01017
Name
(RefSeq) mRNA cleavage and polyadenylation specificity factor complex subunit (Pta1)
KO
K06100
symplekin
Organism
afm
Aspergillus fumigatus
Pathway
afm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AFUA_8G04420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afm03021
]
AFUA_8G04420
03019 Messenger RNA biogenesis [BR:
afm03019
]
AFUA_8G04420
Transcription machinery [BR:
afm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
AFUA_8G04420
Messenger RNA biogenesis [BR:
afm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
AFUA_8G04420
U7-dependent histone pre-mRNA processing factors
AFUA_8G04420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
3504784
NCBI-ProteinID:
XP_747249
UniProt:
Q4WCH3
LinkDB
All DBs
Position
8:complement(994679..997494)
Genome browser
AA seq
767 aa
AA seq
DB search
MSETAANHLADQVAQLNAARNLVLGDAAFYPQIVNGIIPIIGAHARLELRRWGAEFLAET
FASPALATAQKEQLAGRVLQTIREIIELPEGDTPVLKHIVQIAASLYPLAFRHIINHPED
SALWENMMAVKQDILRKWDSSPYPVKVCCIKFVQRVVQVQTHGPIADPRVCVQPSDYSVN
KTWLLLTISSGPSIMKRPWPSFPKITPFWLYPISRRKPLACSTGCCRFSKKTPGTINNFR
SHTAQCASSLILSCSDPLLVNATLNCLAVLIRNRQSVGNKIINAVLNFYPAKQVRSPLTP
AIRIGVKSMERTARALFVNILKKNPSHPLAGKMQHHMERLMQSRLETIDDASKKRGLPFE
PTDGLDNAKRARLDAETPPLIKIPPLPPGPVSYAQLYTLTEDSGLSSFDVKQLPPDLLVK
IAVPVLARVDPSALMQAVEGVRARYQTLTRQQAAKPQVVVPEDEDDDYEPEYQPTDVAVA
AAPQADVVSADMAELQPDLVSLGPFVLPQPPPLTEEEAADIGRSAVGRVFEMLTSAAMAP
NPTKGKAQQHLGFSRLAGSTFDRDAWVTLLTRLATRAPATLEVDDKKTESDPRARKTPAI
SNFIRESLYRYILEDFRARVNVGIMWLNEEWYNDRIQMKFAATQRTEEDEASIPLHYDQW
VLRLLDGFLPYLDSRDTKIFIRFLSEIPEVTIPITKRVSRKILAKWRPHVVEQQQQQQQQ
EQSEQQEQISLASRSVPAESTAPPADDGSAPAPADSSIQPQVSASET
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagactgcggcaaaccaccttgccgaccaggtcgcacagctcaatgctgctcga
aatctcgttctcggcgatgccgccttctatccgcagatcgtgaacggaatcattcctatc
atcggtgcgcatgcgcgattggaactgcgacgatggggagcggagtttctggcagaaaca
ttcgccagtcccgctttggcaacagcacaaaaggaacaattggcgggcagggtattacag
acgatacgagagatcatagagttgcctgagggagacactccggtcttgaagcatatagtg
cagattgcggccagcttgtatccgttggcttttagacacataatcaatcatccagaagac
agcgctttgtgggaaaatatgatggctgtcaagcaggatatcctgcgcaaatgggactca
tctccttatccagtcaaagtgtgctgtatcaagtttgttcagcgggttgttcaggtgcag
acacatggccccattgcagaccctagagtatgtgtacagccctctgactatagtgttaat
aagacttggttgttgttgacaatctccagcggcccgagcataatgaaacgtccttggcca
tcgttcccaaaaatcactccattttggctctaccccatctcgaggcggaagcctctggcc
tgctcgacaggctgctgtcggttttccaagaagacgccaggtaccatcaataactttcga
agccacaccgctcaatgtgcctcctcgctaattctttcctgtagcgatcctctcctcgtc
aatgctacgctaaactgcctggcggtgctgatccgaaatcgacagtccgttggcaacaag
atcatcaatgctgttctgaacttctaccctgcgaaacaggtgcgctctccactgacacct
gctatccgtattggcgtcaagtcgatggaacgaacggctagagcgttgtttgtaaatatc
ctgaagaaaaatccgagccatccccttgcgggcaagatgcagcaccacatggaacgtttg
atgcagtcccgcttagaaaccatagatgatgcatccaagaagcgaggactgccatttgag
ccgaccgatgggcttgataatgctaaacgtgccagactcgatgcagaaacgcccccattg
atcaagattcctcctcttccaccaggtcctgtcagttacgctcagctgtataccttaaca
gaagactcgggtctttcctcctttgacgtgaagcaattaccacccgatctcctagtcaag
atcgcagtccccgtgctagcccgggtcgatccgtctgcgttgatgcaggctgttgaaggt
gtccgagccagataccaaactcttactcgacaacaggccgcaaaacctcaggtggtcgtc
cccgaggatgaggatgatgactatgaacctgaataccagcctacggatgttgccgtagca
gctgctccgcaagcagatgtcgtatccgctgatatggcagagttgcagccagatctagtc
tctcttggtccattcgtcttgccgcaaccaccgccgttgacggaagaagaggccgcggac
attggtcgcagcgccgtaggaagagtctttgagatgctcacatcagctgcgatggccccg
aaccctaccaaaggaaaagcccagcagcacctgggcttttctcgattagcgggcagcaca
ttcgaccgtgatgcttgggttaccttacttaccagacttgccacgagagcgcccgcaact
ctagaagttgatgacaaaaagaccgaatccgacccacgcgccaggaagaccccagcaatc
tcgaatttcatccgcgagtcattataccgatacattcttgaagacttcagagcgcgggtc
aacgtcgggatcatgtggttgaatgaagaatggtacaatgaccgaattcagatgaagttc
gctgctactcagcgaaccgaggaagatgaggcatctatacccctacattacgatcaatgg
gtcctgcgactattggatggctttttgccctatctggattcccgggataccaagattttc
atccgatttctcagcgaaataccggaggtcactatacccatcacaaagcgagtctccaga
aaaatcctggccaagtggcgaccgcacgtcgtagaacagcagcagcagcaacagcaacaa
gaacagtccgaacaacaggagcagatctccctggccagccgctcagtaccagcggaaagc
actgcaccacccgcagatgacgggagtgcgccagcgccagcggactccagcattcagccg
caagtatctgccagcgaaacttga
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