Acidimicrobium ferrooxidans: Afer_0023
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Entry
Afer_0023 CDS
T00956
Name
(GenBank) polynucleotide adenylyltransferase/metal dependent phosphohydrolase
KO
K00974
tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:
2.7.7.72
3.1.3.- 3.1.4.-]
Organism
afo
Acidimicrobium ferrooxidans
Pathway
afo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Afer_0023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afo03019
]
Afer_0023
Enzymes [BR:
afo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
Afer_0023
Messenger RNA biogenesis [BR:
afo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Afer_0023
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
HD
PolyA_pol_RNAbd
tRNA_NucTran2_2
KorB
Motif
Other DBs
NCBI-ProteinID:
ACU52998
UniProt:
C7M1E9
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All DBs
Position
complement(23703..25091)
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AA seq
462 aa
AA seq
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MLPALLRPLIEALRPLAARFDERQRHLYLVGGVVRDALLGIEPNGDVDATTDATPEEIVE
IVRPVATHFNLTGLRFGTVAFHYHGVPLEVTTHRGEAYDSSTRKPTVHFVSALAEDLLRR
DFTVNAMAVEVTSDDPTLIDPFGGMEDLLARRLRTPMDPRRSFSDDPLRMLRCARFIARL
DLEPQRALVDAVHELAPRLEVVSRERIRDELSRLLVVPDPSKGLWFLVDTPLAAEFLPEL
PALRLEQDPIHHHKDVLAHTIAVTASCSPRLRLRLAALLHDIGKPATREIGPNGVSFHFH
DVVGARMARRILRELRYPNDLVDDVARLVELHLRFHTYAQGWSDAAVRRYVRDAGELLED
LNELTTCDATTRNERRRRMFAERMATFEERARELAERDALRARRPPIDGLEVMRILEIPP
GPAVGRAMRFLTDLTIDEGLNDPDEARRRLLEWWRSHSGEEA
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
gtgctccccgccctactccgcccactcatcgaggcgctccgaccgcttgccgcacgcttc
gacgaacgacaacgccacctctacctcgtcggcggcgtggtccgcgacgcactgctcggc
atcgagccgaacggtgacgtggatgccacgacggacgcgacgcccgaggagatcgtggag
atcgtcagacccgtcgcgacgcacttcaacctgaccggcctccgcttcgggacggtcgcc
ttccactatcacggcgtgccgctcgaagtcacgacccaccgaggcgaggcctacgactcc
tccacccgcaagccgaccgtgcacttcgtctcggcgctcgccgaggatctcctccgacgc
gacttcacggtgaacgccatggcggtcgaggtcacgagcgatgacccgaccctgatcgac
ccgttcggcgggatggaggaccttctcgcgcgccgattgcgcactcccatggacccccga
cgctccttcagcgacgatccgctgcgcatgttgcgctgtgcacgcttcatcgcgcgcttg
gatctcgagccgcagcgcgcgctcgtcgacgcggtccacgaactcgccccgcgcctcgag
gtcgtctcgcgtgagcgcatccgcgacgagctctctcgactgctcgtcgtgcccgatccg
agcaagggtctctggttcctcgtcgacacgcccctcgccgccgagttcctcccggagctt
ccggcgctcaggctcgagcaggaccccatccatcaccacaaggacgtactcgcccacacc
atcgcggtcaccgcaagctgctcaccgcggctccgcctgaggctcgccgccctcctccac
gacatcggcaagcctgcgactcgcgagatcgggccgaacggcgtgagtttccacttccac
gacgttgtcggggctcgtatggcccgtcgcatcctgcgagagctgcgctaccccaacgac
ctcgtcgacgacgtcgctcgcctcgtcgagcttcacctgcgcttccacacctatgctcag
ggttggagcgacgccgccgtccgtcgctacgtgcgcgacgcaggcgagctcctcgaggac
ctgaacgagctcaccacctgcgacgcgaccacccgcaacgagcgccgacgacgcatgttc
gccgagcgcatggcgacgttcgaagagcgcgcacgggagctcgccgagcgcgacgcgctc
cgagcgcgtcggcctccgatcgacggactggaggtcatgcgcatcctcgagatcccacca
ggtcctgccgtgggccgcgcgatgcgcttcctcaccgacctcacgatcgacgaggggctg
aacgatcccgacgaggcgaggcgccgcctcctcgagtggtggcggtcccactcgggcgag
gaggcctaa
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