Acidimicrobium ferrooxidans: Afer_0392
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Entry
Afer_0392 CDS
T00956
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
afo
Acidimicrobium ferrooxidans
Pathway
afo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Afer_0392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afo03021
]
Afer_0392
03400 DNA repair and recombination proteins [BR:
afo03400
]
Afer_0392
Enzymes [BR:
afo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Afer_0392
Transcription machinery [BR:
afo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Afer_0392
DNA repair and recombination proteins [BR:
afo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Afer_0392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
VirionAssem_T7
Motif
Other DBs
NCBI-ProteinID:
ACU53360
UniProt:
C7M2W6
LinkDB
All DBs
Position
403393..407256
Genome browser
AA seq
1287 aa
AA seq
DB search
MLDLGRFDQIRIGLATTEAIRAWSHGEVKKPETINYRTLRPERDGLFCERIFGPTRDWEC
QCGKYKRVRFRGIVCERCGVEVTRSKVRRERMGHIELAAPVVHIWYLRGTRSWLAYLLMG
TSPKEELKAKQLEKVIYFAANLVTWVDEERRHQDLPNLEVEVLEEVRAIESERDVELERR
YQAMEAELAELEEQGAREAEVRQRQRALEREITQLRERYAARIDLARRTFDEFRELYPRQ
IIEDELLWRELRSRYGSYFDGGMGAEAIADLIRRIDFDAELAKLRELIDPAEGRRPLSAQ
RRQKAIRRLRILAAFNQRDEEGRRINDPMAMILEVVPVIPPDLRPMVQLDGGRFATSDLN
DLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVVGPGNRPLKS
LSDMLKGKQGRFRQNLLGKRVDYSGRSVIVGGPTLQLHQCGLPKIMALELFKPFVMRRLV
ELGYAQNIKSAKRMVERRRPQVWEVLETVIKEHPVLLNRAPTLHRLGIQAFEPVLVEGKA
IQIHPLVTTAFNADFDGDQMAVHLPLSPEAQAEARVLMLSANNTVSPATGRPITVPGLDM
VFGLFYLTIVREEEPGAGKVFRHDYEVVRAWETGNLGLHAPITLRRRDGDGNVEELRTTA
GRVMFNQALPADFPFVNEVVGKKALPIGSIVERVVTQYPRNVIEETLDRIKSVGFTFATR
AGLTISTDDVTTPAAKAEILDRYEREADKAEAQYRRGIITDDERKQKEIEIWTAATAEIG
RAIDEMLASNPLNPLAMMVESGARGNPQQIRQISGLKGLVANPRGEMIPRPIKSSFREGL
EVLEYFLSTHGARKGLADTALRTADSGYLTRRLVDVAQELIVREEDCGTSRGIWIDDVAE
DSAQRRSYLETRAFGRVLAEAVDLGDGSQLPAGTLLTDELVKQLAADPAVERIRVRTPLT
CETPHGVCATCYGQGFGGRGLIELGEAVGVVAAQSIGEPGTQLTMRTFHQGGVAGADITH
GLPRVVELFEARSPRGAAVLAHASGVVHIEEEENGRRVTITHDDGSDEVYVLPLRAHLEV
AEGEVIEAGEAIVSGPKDPKQLLEIKGIRETQRYLVEEVQKVYRDQGVSIHDKHIELIVR
QMLRRVLVAEPGDSPFLPGERVDTQRFAEVNRELFAEGKRPAEGRPELMGITKASLATES
WLSAASFQETTRVLTEAAIEGRSDHLLGLKENIILGKLIPAGTGAPRYRSVAVKAPHYRR
LAYWSSEEDLGGFDGGPGYEAHGGPVD
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacctgggtcgattcgaccagatccgcatcgggcttgccacgacggaagccatc
cgcgcctggtcacacggcgaggtgaagaagccggagacgatcaattaccgtacgttgcgt
ccggaacgcgatgggctcttctgcgagcgcatcttcggccctacgcgcgactgggagtgc
cagtgcggcaagtacaagcgcgtgcgctttcgcgggatcgtctgcgagcgctgtggcgtc
gaggtcacccgctccaaggtccgacgggagcggatgggccacatcgagctcgcagcaccg
gtggtgcacatttggtacctgcgcgggacgcgttcgtggctggcctacctgctcatgggg
acctcccccaaggaggagctcaaggccaagcagctggagaaggtgatctacttcgccgcc
aacttggtgacctgggtcgacgaggagcgtcggcaccaggacctgccgaacctcgaggtc
gaggtgctcgaggaggttcgggcgatcgagtcggagcgtgacgtcgagctcgagcgccgg
taccaggcgatggaggcggagctcgccgagctcgaggagcagggtgctcgcgaagccgag
gtgcgccagcgccagcgcgcgctcgagcgggagatcacgcagctccgcgagcgctacgcg
gcgcgcatcgacctcgcgcgtaggaccttcgacgagttccgcgagctctacccgcgccag
atcatcgaggacgagctgctgtggcgcgagctgcggtcgcggtatggctcctacttcgac
ggcggcatgggggccgaggcgatcgccgacctcatccgtcgtatcgacttcgatgccgag
ctggccaagctccgcgagctcatcgaccccgccgagggtcgccgcccgttgtcggcacag
cgtcgccagaaagccatccgacgcctgcgcatcctcgccgcgttcaaccagcgcgacgag
gagggtcgtcgtatcaacgacccgatggcgatgatcctcgaggtcgtcccggtgatcccc
ccggacctgcgtccgatggtgcagctcgacggcgggcggttcgcgacgtcggacctcaac
gatctgtatcggcgcgtgatcaatcgcaacaaccggctcaagcgtttgttggatctcggc
gcgccggagatcatcgtcaacaacgagaagcgcatgctccaggaggcggtcgacgccctc
ttcgacaacggtcgccgtgggcggccggtggtcggcccgggcaaccgtcctctgaagagc
ctctccgacatgctcaagggcaagcagggtcgcttccgccagaacctgctcggcaagcgc
gtggactactccggccggtccgtcatcgtcggcggcccgacgctgcagctccatcagtgt
gggctcccgaagatcatggcgctcgagctgttcaagccgttcgtcatgcgtcgcctggtg
gagttgggctatgcccagaacatcaagtcggccaagcgcatggtcgagcgtcggcgtccc
caagtgtgggaagtgctcgagacggtgatcaaggagcatccggtgctcctgaaccgtgca
ccgaccctgcaccgactcggcatccaggcgttcgagccggtgctggtcgagggtaaggcg
atccagatccatcctctggtgacgaccgcgttcaacgccgacttcgacggcgaccagatg
gcggtgcatctgcctctgtcgcctgaggcgcaggccgaagcccgcgtgctcatgctctcg
gcgaacaacacggtgtcgccagcgaccggacggccgatcacggtccccgggctcgacatg
gtgttcggtctcttctatctcaccatcgtgcgcgaagaggagccaggtgccggcaaggtg
ttccgccacgactatgaagtggtccgggcctgggaaaccggcaatctcggcttgcacgcg
ccgatcaccctccgtcgtcgcgatggcgatggcaacgtcgaagagctgcggacgacagcc
gggcgtgtgatgttcaaccaggcgctgccggccgacttccccttcgtcaacgaggtcgtc
gggaagaaggcgcttcccatcggctcgatcgtcgagcgggtggtgacccagtacccccgc
aacgtcatcgaggagacgctcgatcgcatcaagtcggttgggttcaccttcgcgacgcgc
gctgggctcaccatctcgaccgacgacgtcacaaccccggccgccaaggccgagatcctc
gatcgctacgagcgcgaggcggacaaggccgaggcgcagtaccggcgaggcatcatcacc
gacgacgagcgcaagcagaaggagatcgagatctggacggcggcgaccgcggagatcggt
cgggccatcgacgagatgctcgcctccaacccgctcaatccgctcgcgatgatggtcgag
tcgggagcgcgaggcaaccctcagcagatccgccagatctccggcctcaagggcctcgtc
gccaatccgcgcggtgagatgattccgcgcccgatcaagtcgtcgttccgtgagggcctc
gaggtgctcgagtacttcttgtcgacgcacggtgcgcgcaagggcctcgccgacacggcg
ctgcgcaccgccgactctgggtatctcacccgtcgcctcgtcgacgtcgcccaggagctg
atcgtgcgcgaagaagattgtggcacgtcgcgggggatttggatcgacgacgtcgccgag
gactcggcccagcgtcgcagctacctcgagacgcgggcgttcggacgggtcctcgcagag
gcggtcgatcttggcgacgggtcgcagctcccggccgggacgttgctcaccgacgagctc
gtcaagcagctggcagccgatccggcagtcgagcggatccgtgtgcgcaccccgctcacc
tgcgagacgccccacggcgtgtgtgcgacctgttacggccaaggttttggggggaggggg
ctcatcgagctcggcgaggccgtcggcgtcgtcgcggcccagtccatcggcgagcctggg
acgcagctcaccatgcgaaccttccaccagggcggcgtcgcgggcgccgacatcacgcac
ggcttgccgcgcgtggtggagctgttcgaggcgcgttcgcctcgtggagccgcggtgctg
gcgcatgcgtccggtgtcgtgcacatcgaggaggaagagaacggtcggcgggtcaccatc
acccacgacgacggctccgacgaggtctacgtgctcccgctcagggcccatctcgaggtg
gccgagggcgaagtgatcgaggccggcgaggccatcgtgagcggtccgaaggaccccaag
cagctcctcgagatcaagggcattcgcgagacccagcgttacctggtcgaggaggtccag
aaggtctatcgcgaccagggtgtgtccatccacgacaagcacatcgagctcatcgtccgt
cagatgctgcgccgagtgctcgtggccgagcctggcgattcccccttcttgccgggagaa
cgcgtggacacccagcgctttgccgaggtgaaccgcgaactgttcgccgaggggaagcgc
cctgccgagggtcggccggagctcatgggtatcaccaaggcgtcgctcgcgacggagtcg
tggctctcggcggcctccttccaagagaccactcgggtgctcaccgaggccgcgatcgag
gggcgttcggatcacctgctcggcctcaaggagaacatcatcctcggcaagctgatcccg
gcaggtacgggtgcgccgcgttaccggtcggtcgcggtcaaggctccccactatcgccga
ctcgcgtactggtcgagcgaggaagacctcggtgggttcgacggggggcctggctatgag
gcgcatggcggccctgtagactga
DBGET
integrated database retrieval system
