Acidimicrobium ferrooxidans: Afer_0640
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Entry
Afer_0640 CDS
T00956
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
afo
Acidimicrobium ferrooxidans
Brite
KEGG Orthology (KO) [BR:
afo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afo03016
]
Afer_0640
Enzymes [BR:
afo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Afer_0640
Transfer RNA biogenesis [BR:
afo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Afer_0640
Prokaryotic type
Afer_0640
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Methyltranf_PUA
DKCLD
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
ACU53594
UniProt:
C7LXY6
LinkDB
All DBs
Position
646582..647478
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AA seq
298 aa
AA seq
DB search
MIQGIYLVDKPSGPTSHDVVARARRAFGTRRVGHAGTLDPMASGLLVLGVDRATRLLRYL
EAQTKRYRAVALLGVATDTDDLDGVVVDRRPVEEPTREAVVTACRRFVPGYDQVPPAYSA
LHLDGERAYVRARRGEDVTLPRRRVRIDEIEVGAIWRDGGPGEPQGVRVELTVTCGPGTY
LRSLVRDLGEALGTPATLASLRRERVGRLEVAQAVGLEDLERATPVPLPLALAGLGRVEL
DGVDATRFLHGQRIEAPSGLDEGDVLVGAEGSWLGVASCDGHVLAPRVVLVDAGVARA
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgatccagggcatctacctcgtcgataagccgagcggcccgacctcccacgacgtcgtg
gctcgagctcggcgtgcgttcggcacgcggcgcgtcggtcacgccgggacgctcgatccg
atggcgagcggactgctcgtgctcggtgtcgatcgcgcgacccggctgctccgctacctc
gaggcccagacgaagcgctatcgggccgtcgcgctcctcggcgttgcgaccgataccgac
gatctcgacggtgtcgtcgtcgatcggcgaccggtcgaggagccgacccgcgaggccgtg
gtgacggcgtgccgtcgcttcgtgccgggttacgaccaggtgccaccggcctacagcgcg
ctgcacctcgacggcgagcgtgcctacgtgcgggctcgccggggtgaggacgtcacgttg
cctcgtcggcgggttcgcatcgacgagatcgaggtgggtgcgatctggcgcgatggcggc
ccaggggagccccagggcgttcgcgtcgagctcaccgtcacctgtggccccggaacctac
ctccgctcgctggtacgtgacctcggtgaggcgctcggcacgcccgcgacgctcgcgtcg
cttcggcgcgagcgtgtcggtcggctggaggtcgcccaggcggtggggctcgaggacctc
gagcgagcgacaccggtcccgcttccgctggcgctcgctggtctcggccgtgtcgaactc
gacggggtcgacgccacgaggttcctccatggtcagcgcatcgaggcgccgtcgggtctc
gacgagggcgacgtgctcgtcggtgccgagggttcgtggttgggggtggcgagctgtgac
ggccacgtgctcgcaccgcgcgtggtgctcgtcgatgcgggagttgcgcgggcatga
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