Acidimicrobium ferrooxidans: Afer_0844
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Entry
Afer_0844 CDS
T00956
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
afo
Acidimicrobium ferrooxidans
Pathway
afo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Afer_0844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afo03400
]
Afer_0844
DNA repair and recombination proteins [BR:
afo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Afer_0844
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Afer_0844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_21
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
AAA_33
AAA_22
AAA_23
NACHT
nSTAND3
DnaJ_CXXCXGXG
cobW
Viral_helicase1
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
ACU53790
UniProt:
C7LYI2
LinkDB
All DBs
Position
863891..866728
Genome browser
AA seq
945 aa
AA seq
DB search
MPEWIRVRGAREHNLQNVSVDVPRDRLVVITGLSGSGKSSLAFDTIFAEGQRRYVESLSS
YARQFLGLMEKPDVDVIDGLSPAIAIDQKSASHNPRSTVATVTEIYDYLRLLYARVGHPH
CPSCGREVSRQTPQDIVDWVLARYENRRLLVVAPLVRGRKGTYDELLDRLAREGWSRVLV
DGVLWSLDDRGSINLARYEAHTIAVVVDRIVPKSADRQRLTESVETALKAAGGVVEVVPV
GDDGELGAGERFSETLACAVCGISLGELEPRSFSFNSPFGACPACGGLGVRFVVDEDLVM
PDPNRSVLQGGVVALGTLRADLVRRQMERALRAAGFSLSTPVGKLPEAARRLILEGASEP
IEERWVDRAGRERRAQVTFQGVAAFLERRRSEAESEVARQLAESFMREVPCDACGGTRLR
PEARSVTVDGVSLDTLVNASIRRAVEVVDAMRFGEREATIATPVLREIRARLQFLCDVGL
DYLTLGRAARTLSGGEAQRIRLASQIGSGLAGVLYVLDEPSIGLHQRDNRRLIDTLVHLR
DLGNTVIVVEHDEETIRAADWVVDVGPGAGEHGGTIVHAGTVAELETVESSLTGAYLSGR
RAIDVPVARRMPERGWLRVLGAREHNLADIDAAFPIGLLTCVTGVSGSGKSTLVNEILFR
ALRAQLHRSHDVPGRHKAIEGIELVDKVIDIDQAPIGRTPRSNPATYTGLFDHVRRLFAE
TPEARARGYRPGRFSFNVKGGRCEACQGEGTVRIEMNFLADVYVTCDVCGGSRYNRDTLE
IRYRGLTIADVLALSVEEALAFFAKQPAIARHLTTLAEVGLGYVRLGQAATTLSGGEAQR
VKLATELARRATGRTVYILDEPTTGLHFEDVRSLLGVLHSLVDQGNTVIVIEHNLDVIKT
ADWIIDLGPEGGSGGGTVVAQGTPEDVAQVPSSHTGAFLAPLLGR
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagtggatccgcgttcgcggcgcgcgagagcacaacctccagaacgtctcggtg
gacgtgccacgcgatcgtctcgtggtcatcacgggtctgtcgggctcgggcaagagttcg
ctcgcgttcgacacgatcttcgccgagggacagcgtcgctacgtcgagtcgctgtcgtcg
tatgcccggcagttcctcggtctcatggagaagcccgacgtcgatgtcatcgatgggctc
tcacctgccatcgcgatcgaccagaagtcggcttcgcacaatccccgctcgaccgtcgcg
accgtcacggagatctacgactacctgcgtttgctctacgcgcgcgtcggtcatccccac
tgcccatcgtgcggacgtgaggtgagccggcagacgccccaggacatcgtggactgggtc
ctcgcacgttatgagaacaggcgtttgctggtcgtggcgccgctcgttcgcggccgcaag
ggaacctacgacgagctgctcgaccgactggcgcgcgagggatggtcgcgcgtgctcgtg
gacggggtgctgtggtcgctcgacgaccgaggctccatcaacctggcgcgctacgaggcg
cacaccatcgcggtggtcgtcgaccggatcgtgcccaagtccgccgaccgccagcgtctg
accgagtcggtggagacggcgctcaaggccgctggcggcgtcgtcgaggtcgtgccggtc
ggcgacgacggcgagctcggagcgggcgagcgcttctccgagacgctcgcctgtgccgtc
tgcggcatctcgctgggcgagctcgaacctcggagcttctcgttcaacagccccttcggt
gcctgtccggcttgtggggggctcggggtccgcttcgtcgtcgacgaggatctcgtcatg
cccgacccgaatcgctcggtcctccagggcggcgtcgtcgcgctcgggacgctgcgggcc
gatctcgttcgtcggcagatggagcgcgccctgcgcgccgcgggtttctcgctctcgact
ccggtcggcaagcttcccgaggcggcccgacgcctcatcctcgagggcgcttccgagccg
atcgaggagcgctgggtcgatcgtgccggtcgtgagcgcagggcccaggtgacgttccag
ggcgtcgccgccttcctcgagcgacggcggagcgaggccgagtcggaggtggctcgtcag
ctcgccgagagcttcatgcgtgaggtgccgtgcgatgcctgcggcggcacccggttgcgg
ccagaggcccggagcgtgaccgtcgatggggtgagcctcgacacgctcgtcaacgcctcg
atccgccgtgcggtcgaggtggtggatgcgatgcgcttcggggagcgcgaggcgaccatc
gccacccctgtgctgcgcgagattcgcgcacggctgcagttcctctgcgacgtggggctc
gactacctgacgctcggtcgggcggcgagaacgctgtcgggcggggaggcccagcgcatc
cggcttgcctcgcagatcggctcgggcctcgccggggtgctctacgtgctcgacgagccg
tcgatcgggctccaccagcgggacaatcgacgcttgatcgacacgctggtgcacctacgg
gatctcggcaacacggtgatcgtcgtcgagcacgacgaggagacgattcgcgccgcggac
tgggtggtcgatgtcggaccgggcgcgggcgagcacggcggcacgatcgtgcacgccggc
acggtcgccgaactcgagacggtcgagtcctccctcaccggtgcctacctctcggggcgc
cgtgcgatcgacgtgccggtggctcggcgcatgcccgagcggggatggttgcgggtgctg
ggcgctcgcgagcacaacctggccgacatcgacgctgcgttcccgatcggccttttgacc
tgtgtgaccggggtatcggggtcgggcaagtcgacgttggtgaacgagatcttgttccgg
gcactcagggcgcagctgcaccgctcgcacgacgtccccggtcgccacaaggccatcgag
ggcatcgaactcgtcgacaaggtgatcgacatcgatcaggcaccgatcggccgcaccccg
cgctcgaatcctgcgacctacaccggtctgttcgaccacgttcgccgtctcttcgccgag
acacccgaagcgcgggctcgtggctatcgaccaggtcgcttctcgttcaacgtcaagggg
gggcgctgcgaggcgtgccaaggcgagggaacggttcgcatcgagatgaacttcctcgcc
gacgtgtacgtgacctgcgatgtctgtggcggctcgcgctacaaccgtgacaccctggag
atccgctaccgtgggctcaccatcgccgacgtgctcgcgctctcggtcgaggaggcgttg
gcgttcttcgcgaagcagccggcgatcgcgcgccacctcacgacgctggccgaggtggga
cttggttacgtccgtctcggtcaggcggccacgaccctttcgggcggcgaggcccagcgc
gtcaagctcgcaaccgaactcgcgcggcgagcgaccgggcgaacggtctacatcctcgac
gagccgacgacgggactgcacttcgaggacgtgcgcagcttgctcggggtgctgcactcg
ctggtggatcagggcaacacggtgatcgtgatcgagcacaacctcgacgtgatcaagacg
gccgactggatcatcgatctcggacccgaaggtggcagtggcggcggcaccgtcgtggcg
cagggtacgccggaggacgtggcccaggtgcccagctcgcacacgggggccttcctcgct
ccgttgcttgggcgatga
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