Acidimicrobium ferrooxidans: Afer_1260
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Entry
Afer_1260 CDS
T00956
Name
(GenBank) RNA polymerase, sigma 32 subunit, RpoH
KO
K03086
RNA polymerase primary sigma factor
Organism
afo
Acidimicrobium ferrooxidans
Pathway
afo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
afo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Afer_1260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afo03021
]
Afer_1260
Transcription machinery [BR:
afo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Afer_1260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Motif
Other DBs
NCBI-ProteinID:
ACU54191
UniProt:
C7LZN3
LinkDB
All DBs
Position
complement(1316365..1317249)
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AA seq
294 aa
AA seq
DB search
MSGVSPEALDGARAVLARGRRGRLLPDEEVALSIVLQEAQEAEDVPPDVAAVVQAARERF
VEGNMGLVVSIARRYVQPGISLDDLVQEGTIGLLRAIDLYDGRRGFRFSTYATWWIRQAI
AQALTRTRRDVVLPRGIAAELARVEVQRRELEQALGRQPSMAELAAASGIDELRVRELQG
YARSVLSLDQAVGEERDVTLADIVPDRDAEPIEETIEHADLRTVIAGALAHLEPREREVL
AFRFGLEGNEPHSLEDAAAYFGIARERIRQIEARAIARLRRGDLAPVLRRVLED
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
gtgagtggggtgtcgccggaggcgctggacggcgctcgggcggtgctggcgcgcgggagg
cggggtcgcctgctgcccgacgaggaggtcgccctctccatcgtgctccaggaagcccag
gaagccgaagacgtgccgcccgacgtcgcggcggtggtccaagcggcgagggagcgcttc
gtcgagggcaacatgggcctcgtcgtgagcatcgctcgacgctacgtgcaaccggggatc
tcgctcgatgacctcgtgcaggagggcacgatcggcctcttgcgtgccatcgatctctac
gacgggcggcgaggatttcgtttctccacgtacgcaacctggtggattcgccaggcgatc
gcgcaggcgctcacgcggacgcgccgcgatgtggtcttgcctcgggggatcgccgccgaa
cttgctcgtgtggaggttcagcggcgcgagctcgagcaagcccttgggcggcagccatcg
atggcggagctcgccgccgcgagtgggatcgatgagctgcgcgtgcgcgaactccagggt
tacgcgcgttcggtgctctcgctcgatcaggcggtaggcgaggagcgcgacgtgacgctg
gctgacatcgtgcccgaccgcgacgcagaaccgatcgaggagaccatcgagcacgctgat
cttcgcacggtcatcgcaggcgcactggcccatctcgagccacgcgaacgtgaggtgctc
gccttccgcttcggtctggagggcaacgagccccacagcctcgaggatgcggcggcgtac
tttggcatcgcgcgcgagcggattcgccagatcgaggctcgcgcgatcgcacggttgcgc
cgcggggatctcgcgccggtgctgcggcgtgtgctcgaggactag
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