Acidimicrobium ferrooxidans: Afer_1467
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Entry
Afer_1467 CDS
T00956
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
afo
Acidimicrobium ferrooxidans
Pathway
afo03030
DNA replication
afo03430
Mismatch repair
afo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Afer_1467
03430 Mismatch repair
Afer_1467
03440 Homologous recombination
Afer_1467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afo03032
]
Afer_1467
03400 DNA repair and recombination proteins [BR:
afo03400
]
Afer_1467
Enzymes [BR:
afo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Afer_1467
DNA replication proteins [BR:
afo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Afer_1467
DNA repair and recombination proteins [BR:
afo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Afer_1467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
UVR
DUF7508
GIY-YIG
DNA_pol_A_exo1
DNApol_Exo
Motif
Other DBs
NCBI-ProteinID:
ACU54390
UniProt:
C7M082
LinkDB
All DBs
Position
1535224..1536651
Genome browser
AA seq
475 aa
AA seq
DB search
MEQLGLDDDGTDLRTVRFAILDVETTGAASGADELTEVAMMVVQEGRALAHLQSLVHTDR
PIPPAIVALTGISNELVADAPSARTVIERTARLLEGTVMVGHNVRFDRSFLGAAADAAGI
TLPEVPVLDTLTLSRVLLDGEVPNHRLATLAHYLQLPPPSHRAMADVVTTVALLHRLIER
AGALGVTTLEGLLALRRPRRSGADLERQARRLPHRPGVYYFHDAGRVLYVGVATDLHDRV
RSYFSADTRTSVRRLLRRASSISARPVPCDIARPLTELAEIQTLRPPFNQVGVRRPRTRS
FVTPEGRVIAPWPLNQPDPPPSISTCFDGDAHTVARALEEAIRHLQAEMIQASDDGEYER
AAALRDLGALVATRVPTSLLHEVHREGRRLGLFDPRCDARHELTGPEGLLDLGPDDPELR
SYRALLVLRTIAERRDLILDDELAPLVALVRESVRFRRGSVGAASDPSKGLARSS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtggagcagctcggcctcgacgacgacgggaccgatctgcgaaccgtgcgcttcgccatc
ctcgacgtcgagacgaccggagccgcatccggtgcggacgagctcaccgaggtcgccatg
atggtcgtccaagagggccgtgcgctcgctcacctccaaagcctggtacacaccgaccgc
cccattcccccggcgatcgtggcactcaccgggatctccaacgagctggtcgccgacgca
ccgagcgcccgcaccgtcatcgagcgcacggctcgactgctcgagggcaccgtcatggtc
ggacacaacgtccgcttcgaccgcagcttcctcggcgccgctgccgatgccgccggcatc
acactgcccgaggtaccggtcctcgacacgctcacgctctcgcgcgtcctcctcgacgga
gaggtgccgaaccaccgtctcgccaccctcgctcactaccttcagctcccaccgccgagc
catcgggcgatggcggacgtcgtcaccactgtggcgctcctccaccgtctcatcgagcgg
gccggtgcgctcggcgtcaccaccctcgagggactcctcgcactgcgacgcccacgtcgc
agtggcgccgacctcgagcgccaggccagacgtctcccgcatcgacccggcgtctactac
ttccacgacgcgggccgggtgctctacgtcggtgtcgcgaccgatctccacgatcgcgtg
cggtcgtacttcagcgccgacacacgcacgagcgtgcggcgcctgctgcgacgcgcctcc
agcatcagtgcccggccggtgccctgcgacatcgctcggcctctcaccgagttggccgag
atccagacactgcgaccgcccttcaaccaagtcggcgtccgacgcccgcgcacgcgatca
ttcgtgacgcccgagggacgcgtcatcgcgccatggcccctcaaccaacccgatccgccc
ccgtcgatctcgacgtgcttcgatggcgacgcccacacggttgcgagagcgctcgaggag
gccatcaggcaccttcaggccgagatgatccaagcgagcgacgacggtgagtacgaacgg
gccgcggcgcttcgcgacctcggcgccctcgtcgcaacccgtgtaccgacgagcctgctc
cacgaagtccaccgggagggtcgcaggctcgggctcttcgacccccgctgcgacgcccga
cacgagttgacgggccccgagggactcctcgatctcggcccggacgatcctgagcttcga
agctaccgagcgctcctcgtgctgcgtacgatcgccgaacgtcgtgacctcatcctcgac
gacgagctcgcccccctcgtcgccctcgttcgtgagagcgtcaggttccgccgcggctca
gtcggcgccgcctcggatccgagcaagggtctcgcccgctcgtcctga
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