Acidimicrobium ferrooxidans: Afer_1508
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Entry
Afer_1508 CDS
T00956
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
afo
Acidimicrobium ferrooxidans
Pathway
afo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
afo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Afer_1508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afo03400
]
Afer_1508
Enzymes [BR:
afo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Afer_1508
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Afer_1508
DNA repair and recombination proteins [BR:
afo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Afer_1508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
ACU54431
UniProt:
C7M0C3
LinkDB
All DBs
Position
complement(1575655..1576482)
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AA seq
275 aa
AA seq
DB search
MPEAPEVERVREVLAARVEGATLEGIRMVGRRLVRRHDPELLATVSGRPIVSMRRIGKFL
VFDLGTDALVVHLGMAGRLVVSDASATATHVQLVLDFRRAVITLVDPRTFSEAFVDVLGT
DGRPRRLAGLGPDVFGPEEEIAASLERHAARSRRAIKTALLDQRVVAGLGNMYADETLFR
VGVHPSTPMNVLGRRLVAIAEAAGDVAREALAAGGTTFADRAYRDPLDRPGAFGARLAVY
QRAGSPCPRCATSIVRRVLQGRSAHWCPRCQQGGG
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
gtgccggaggcgcctgaggtcgagcgggtgcgcgaggtgctggccgcacgtgtcgagggg
gcgacgctcgaggggatccgcatggttggacggcgcctcgtgcgccggcacgacccggag
ctcttggcgacggtgtcggggcgcccgatcgtgtcgatgcgacgcatcggcaagttcctg
gtgttcgatctcggcaccgacgcgctggtcgtgcacctcggcatggctggacgtctcgtc
gtctcggacgcctcggcgacggcgacccacgtccagctcgttctcgacttccgtcgcgcc
gtcatcacactggtcgatccgcgcacgttctccgaggccttcgttgacgtcctcggcacc
gacgggcggccgcgtcggctcgcggggctcggtcccgacgtgttcggtcccgaggaggag
atcgcagcgagcctcgaacggcacgctgcgaggtctcggcgtgcgatcaagacggcgctc
ctggatcagcgcgtggtggcgggtcttggcaacatgtacgctgacgagaccctctttcgt
gtcggtgtccatccgagcaccccgatgaacgtgctggggcgacgcctcgtggcgatcgcc
gaggctgcgggcgatgtcgcccgggaggcgctcgcagcgggcggtacgaccttcgcggat
cgggcctatcgcgacccgctcgatcggcctggcgcctttggcgcgcgcctcgccgtctac
caacgtgcgggcagtccgtgccccaggtgcgctacgtcgatcgtccggagggtcttgcag
ggccgatcagcgcactggtgcccgcggtgccagcagggagggggctga
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