Acidimicrobium ferrooxidans: Afer_1594
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Entry
Afer_1594 CDS
T00956
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afo
Acidimicrobium ferrooxidans
Pathway
afo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Afer_1594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afo03400
]
Afer_1594
Enzymes [BR:
afo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Afer_1594
DNA repair and recombination proteins [BR:
afo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Afer_1594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_30
Cas3-like_C_2
SNF2-rel_dom
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACU54516
UniProt:
C7M0K8
LinkDB
All DBs
Position
complement(1678116..1681511)
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AA seq
1131 aa
AA seq
DB search
MASIDPHEAPLAALVEELAATVEDPPALSAAGVALAWHRLAPRRMVVVAEGDREAEAIAN
DLRWWLPRIPVALLPPWDTLPFERVVPSMGTTAARLRALASIVDPPDEGIVVVTTVRAAL
TKLVASAARLERLIVARGDELVRDELITWLEDAGYVREPQVSAAGEYAVRGSIVDVADPG
LASPVRIDLFGDEVDRLAFFDPTTQRSVGDLERVELFPAREVRIDTDLAKQLEALAARVP
AVADRVEAVLAGREPPEPLVPLVLGDVAPTVLDIVDEADLVLVPAKGMDAVIADRLVAEE
RSIREALAPTWGLEADALGSVSLMAEPERLRAVRARLVSADPAGFGARLGVSHRDLAGVF
GRIRSARRDGVHVVVATHGSERARHVAQRLGEEGIDVQLASVATCLEGHGVRVAAGLDLV
ESVELEPASLVVIADASLVRPTAPRASVPTRTTGGLSFDDLVEGSFVVHEAYGVARYRGL
VRQVVDGVSREYLELEFASADRIFLPFEHLALVAPYVGSEEPRLTRLRGGDWQRQVHRAR
RAAQEVAQELVVLYQRRLAATGSSITPDPVLLSEFAERFPYELTRDQERTIAEVLADLAK
PVPMDRLVCGDVGFGKTEIALRAAFAVASEGRQVLVLAPTTLLAAQHAEVFRERFEGTPI
RVGMLSRLSTAREAASIRAELASGELDVCIATHAALGASTRFARLGLLVIDEEQRFGVRH
KEQLKEAFPGVDVLVLSATPIPRSLELSLVGIRDLSVLRTAPVDRHPILTHVGPFDPAVV
TEAIRRELLREGQVFFVHNRVRDIEASARLVADLVPEARVLVAHGQLPPAALERTMAQFW
HGEADVLVATTIVENGIDLARANTLIVDRAEQLGLAQLHQLRGRVGRSGRQAYAYLLTST
TGGISDIALERLRTVAENTDLGAGYRIAMRDLELRGAGTVLGMRQSGHVSEVGYELYVRL
VAEEVARMDGVEEPTPDREVALDVPVSALLAEDYVAEAETRMDLYRRLARARSQAEFDQF
LEELRDRFGPPPAEALALVSLAKARRRLATLGADHALVRRNPRSARLELVVGPLQPSVAT
RLRLERRLHGVVSRGDDLAVPLARREDALGRLEALLEILEGAPSPGVGSPQ
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
gtggcgtcgatcgatccgcatgaggcgccgctcgccgcgctcgtcgaagagctcgcggcg
acggtggaagatccgccggccctgagcgcggctggcgtcgccctcgcctggcaccgactc
gctccgcgacggatggtcgtcgtggccgagggtgatcgagaagccgaggccatcgccaac
gatctgcggtggtggctgcctcggatccctgtcgcgctgttgccaccgtgggataccttg
ccgttcgagcgcgtggttccgagcatgggcacgaccgcagcgcgtctgcgagcgctcgcg
tccatcgtcgatccgcctgacgagggcatcgtcgtggtcacgaccgtgcgagccgccttg
acgaagctcgtcgcctccgcggcgcgcctggagcgtctgatcgtggcgcgaggtgatgag
ctcgtccgtgacgagctcatcacttggctcgaggacgctggctacgtgcgtgagcctcag
gtctcggccgcgggtgagtacgcggtgcgcggatcgatcgtcgacgtcgccgacccgggc
ttggcgtcgccggtgcggatcgacctgttcggagacgaggtggatcggctcgctttcttc
gatccgacgacgcagcgctcggtcggcgacctcgagcgcgtcgagctcttcccggctcgc
gaagttcggatcgacaccgacctcgccaagcaactcgaggccctggctgcacgcgttcca
gcggtggccgatcgggtggaggccgtgctcgcgggtcgagagccccctgagccgctcgtg
ccactcgtgctcggcgatgtcgcaccgacggtcctcgacatcgtcgacgaggccgacctc
gttctcgtcccggcgaagggtatggacgcggtcatcgccgatcgcctcgtcgctgaggag
cgctccattcgggaggcgctcgctccgacctggggactcgaggctgacgcgctcgggtcg
gtcagtctcatggccgagccggaacggctgcgcgcagtgcgcgcccgcctcgtatcggca
gatccagccggctttggtgctcgcctcggtgtgagccatcgcgacctcgcaggggtgttc
ggtcgcattcggagtgcgcggcgcgacggagttcacgtcgtcgtcgccacgcatggctcg
gaacgtgcacgtcatgtcgcccaacgccttggcgaggagggcatcgacgtgcagctggcc
tcggtcgccacctgcctcgagggtcacggcgttcgagtggccgcggggctcgacctcgtc
gagagcgtcgagctcgagccggcatcgttggtggtgatcgcggatgcgagtctcgtacgg
ccgacggctcctcgcgcttcggtgcccacccgtacgaccgggggtctgagcttcgacgac
ctcgtcgagggcagcttcgtcgtccacgaggcctacggcgtcgcgcgctatcggggcctc
gtgcgccaggtggtcgatggcgtctcgcgggagtacctcgagctcgagttcgcgagcgcg
gatcggatcttccttccgttcgagcatctcgcgctcgttgccccctacgtcggctccgag
gagcctcgcctcacccgtctgcgaggcggagactggcagcgtcaggtccatcgtgctcgt
cgcgcggcgcaggaggtcgcccaggagctggtggtgctctatcagcgtcgcttggccgcg
accggttcgagcatcacgccggacccggtgctgctctcggagttcgccgaacggttcccc
tatgagctcacgcgtgatcaggagcgcaccattgccgaggtgctcgctgatctcgccaag
ccggtgccgatggatcgcctcgtctgtggcgacgtgggcttcgggaagaccgagatcgcg
ctgcgcgccgcgttcgccgtggcatccgagggccgtcaggtgctcgtcctcgcgccgacg
accctgctcgctgcccagcatgcggaggtgttccgggagcgcttcgagggcacgccgatt
cgcgtgggcatgctctcgcgcctcagcacggctcgtgaggctgcgagcatccgcgccgag
ctcgcaagtggcgagctcgacgtgtgcatcgcgacgcacgctgcgctcggcgcgtcgact
cggttcgccaggctcgggctcctcgtgatcgacgaggagcagcgcttcggggtccgacac
aaggagcagctcaaggaggcgttccccggcgtcgacgtgctcgtgctctcggccaccccg
atcccgcgcagcctcgaactgtcgctcgtgggcatcagggatctgtccgtgctgcggacc
gcgcccgtcgatcgccatccgatcctcacgcacgtcgggcccttcgatcccgcggtcgtg
accgaggccatccgtcgggaactcctacgcgaaggtcaagtgttcttcgtgcacaaccgc
gtgcgcgacatcgaggcctcggcccgtctggtcgccgacctcgtccccgaggccagggtg
ctcgtggcgcacgggcaactaccgcccgctgcgctcgagcggacgatggcccagttctgg
cacggagaggccgacgtgctcgtcgccaccacgatcgtcgagaacgggatcgacctcgcg
cgtgcgaacaccctgatcgtcgaccgtgccgagcagctcggcctcgcccagctccaccag
cttcgcgggcgcgtcgggcgctccgggcggcaggcgtatgcctacctgctcacctcgacc
accggcgggatctccgacatcgccctcgagcgactgcggacggtggcagagaacaccgac
ctcggggcgggttaccggatcgcgatgcgagatctcgaacttcgcggggcgggcacggtg
ctcggcatgcgacagtcgggacacgtcagcgaggtcggctacgagctgtacgtgcggctc
gtcgcggaagaggtggcgcgcatggacggcgtcgaggagccgacgcccgatcgggaggtg
gcgctcgacgtgccggtatcggcgctgctcgccgaggactacgttgccgaagccgagact
cggatggacctctaccggcgtctcgcgagggcgcggagccaggcggagttcgatcagttc
cttgaagagctgcgcgatcgcttcgggccgccgccggccgaagcgctcgccttggtgtcc
ctcgcgaaggcacggcgtcggcttgcgaccctcggtgccgatcatgcgctcgttcggcgc
aacccacgcagcgcacgactcgagctcgtcgtcggtccgctccagccgtcggtggcgacc
cggctgcgtctagagcgtcggctccatggcgtcgtgagtcgtggcgacgaccttgcggtt
ccccttgcgcgccgggaggacgcgcttggacgtctcgaggcactgctggagatcctcgaa
ggcgcgccatcgcctggagtaggttctccccagtag
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