Acidimicrobium ferrooxidans: Afer_1615
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Entry
Afer_1615 CDS
T00956
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
afo
Acidimicrobium ferrooxidans
Brite
KEGG Orthology (KO) [BR:
afo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afo03016
]
Afer_1615
Enzymes [BR:
afo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Afer_1615
Transfer RNA biogenesis [BR:
afo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Afer_1615
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Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACU54537
UniProt:
C7M0M9
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All DBs
Position
complement(1706030..1707220)
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AA seq
396 aa
AA seq
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MGDGRVVLMALSASVVSDDEPVWLDRQSDLDELVGVGLGVPRIAIDTEFHRERTYYPRLA
LVQVAIDRRVWLIDPLRVDLSPIAAWFDEVELVFHAADQDLEIIERAVGARPRRIFDTQV
AGGFLGAGHASLGALLDRYLGVSISKAERTSDWLRRPLEPGQLAYAANDVRYLAALADRL
LEELHARGREDWARSEMARLVERRRRDIEPELAWTRIRECRGLDPTGRRIAASVAAWRER
TAQRDDVPVRTVLSDLAVASVAKARPSSLTELRSVRGFDGRMAKERARELLEVVRAARDD
DAIVARGAVRMDRALDPHEVPLVLTAQALVHAVALELELEPSLLGSREEVELFVSRGEGS
LLEGWRYDVVGRGIQAILAGERRIEVHQGRLRQIDR
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
gtgggcgacgggcgggtcgtgctgatggcgctgagtgcgtcggtcgtgagcgatgacgag
cccgtctggctcgatcgacagtcggacctcgacgaactcgtcggcgtcgggctcggggtg
ccacgcatcgcgatcgacactgagttccatcgggagcggacgtactatccacgcctcgcg
ttggtgcaggtcgcgatcgatcggagggtgtggttgatcgatccgctgcgggtcgatctc
tcgccgatcgcagcgtggttcgacgaggtggagctcgtatttcacgctgccgatcaggac
ctcgagatcatcgagcgcgcggtcggcgcacgcccacggcgtatcttcgacacccaggtc
gcaggtggattcctcggggccggtcacgcgagtctcggcgcgttgctcgatcgctacctc
ggcgtgagcatctccaaggctgagcgcacctcggattggctgcgtcgtcctctcgagccc
gggcaactcgcctacgccgcgaacgacgtccgctacctcgctgcgctcgccgaccggctt
ctcgaggaactgcacgctcgtggacgagaggactgggctcgctcagagatggctcgtctc
gtggagcggcggcgtcgggacatcgaaccggagctcgcatggacacggatccgggagtgt
cgtggcctcgatcctacggggagacggatcgcagcgagcgtggcggcctggcgcgagcgc
accgcccaacgcgacgacgttccggtgcgcacggtgctctcggatctcgccgtggcgagt
gtcgccaaggcgcgtccgagctcgctcaccgagctgcgcagcgtgcggggcttcgacggc
cgcatggcgaaggaacgtgctcgtgagctactcgaggtcgtacgagctgcgcgtgacgac
gatgccatcgtggctcggggcgccgtgcgtatggatcgcgcgctcgatccccacgaggtg
ccgctcgtgctcacggcacaagcgctcgtccatgcagtggcgctggagctcgaactcgag
ccctcgttgctcggttcgcgtgaagaggtggagctcttcgtgtctcggggcgaggggagc
ctgctcgaagggtggcgctacgacgtcgtgggacgtgggatccaggccatcctcgcggga
gagcgccgcatcgaggtgcatcaaggacggctgcgtcagatcgatcgctga
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