Acidimicrobium ferrooxidans: Afer_1638
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Entry
Afer_1638 CDS
T00956
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
afo
Acidimicrobium ferrooxidans
Pathway
afo03030
DNA replication
afo03430
Mismatch repair
afo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Afer_1638
03430 Mismatch repair
Afer_1638
03440 Homologous recombination
Afer_1638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afo03032
]
Afer_1638
03400 DNA repair and recombination proteins [BR:
afo03400
]
Afer_1638
Enzymes [BR:
afo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Afer_1638
DNA replication proteins [BR:
afo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Afer_1638
DNA repair and recombination proteins [BR:
afo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Afer_1638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ACU54554
UniProt:
C7M0P6
LinkDB
All DBs
Position
1727456..1731025
Genome browser
AA seq
1189 aa
AA seq
DB search
MRSFVHLHTHTEYSMLDGASRINDLLRAAAADGQPALAITDHGNLYGALEFYKAATRTGV
RPIIGLEAYMAGGSRFERPQRRGRLDDTGGESERGEKLYYHLTLLAENETGYHNLIQLSS
RAFLEGYYYKPRIDFELLEEHREGLIALTGCLGGLVLQHLLRGDEEGARTVAGTLREILG
PDNVFVELQDHGLAEQRRTNPQLLELAKHLGLRTVATNDSHYTHREDHETHDALLCVQTG
ATINDQNRFRFEGSEHYLKSAEEMRERFREVPEACDATLDIAERCSLELTFGQPALPEID
IPVRITGATYDERAGEYLAELVWQGARARYGNDLDETTSERIRYELSVIESMGFPGYFLV
VWDLIRHAREAHIRVGPGRGSAAGSVVAYCLGITQIDPLAYDLIFERFLNPGRKQMPDID
MDFDERYRGEMIRYAAERYGHDHVAQIVTFSTIKARAAVRDAARVLGYPYAVGDKIAKAM
PPLVMGRDTPLAACLELTPGHEDGYAQAAALREMVESDPDVARVVQVAKGLEGLRRQDGI
HAAAVVISRDPLTEYLPIQRKPDPGQDPSEAPIVTQFEMHGVEELGLLKMDFLGLRTLSV
IDRAVELIRATRGVDLDIDAIALDDEATFAMLRAGDAIGVFQLEGGPMRQLMRQLAPSRF
EDVAALVALYRPGPMAANMHVDYADRKNGRKPVSYLHPDLEPVLRDTYGLMIYQESMMRV
AQQIAGYSLEEADNLRKACGKKIRTLIAAEREKFIAGCVASGYGPELGTALFDIIEPFAD
YAFNKSHAFGYGLVSYQTAYLKANFPVQFLAAILTSVRDDKDKLAVYLADAAAHHIAVLV
PDVNASDVDFSVTSGPEGEQIRFGLAAVRNVGEGLVRSIIDERTRSGPFTSFADFLLRVD
ASVLNRRTLESLIKAGAFDSFGHPRRALYEALEGALERVNERRRQRDRGLGSLFEEPSED
ESVVPDLRLDIGSVEWSTPELLAFERDMLGLYVSAHPMHGVNVDRLGRDVTPILDLIEAD
TPPGEPVTVVGAITALAQRTTRKGDLMATLRLEDLQAGIEVMVFPKTMADHGLHLKQDAI
VAITGRIDGREDGRTLVALAIEPVDTAALTSDDAADGATDAVVLRLPKRLAVPDSLVRLR
NVLADHVGTARAVLDIEGMRFELASTSVRPGSSLVGHLRNVFGDQVRVD
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
gtgcgctcgttcgtccacctccacactcacaccgagtactccatgctcgacggcgcgtcg
cgcatcaacgatctcctgcgtgccgcagccgccgacggccagcccgccctcgcgatcacc
gaccacggcaacctctacggtgcgctcgagttctacaaggccgccacacgcaccggcgtg
cgccccatcatcggcctcgaggcctacatggcggggggctcccggttcgagcgcccgcaa
cgtcgcggacgcctcgacgacacgggcggcgagagcgagcgaggtgagaagctctactac
cacctcacgctgctcgcggagaacgagaccggttaccacaacctcatccagctctcctcg
cgtgcgttcctcgagggctactactacaagccccgcatcgacttcgagctcctcgaggag
caccgcgagggactcatcgcgctcaccgggtgtctcggtgggctcgtcctccagcacctc
cttcgcggcgacgaggagggagcgcgcacggtcgccggaacgctgcgcgagatcctcggc
ccggacaacgtcttcgtcgagctccaagatcacgggctggccgaacagcgccgaaccaac
ccccaactcctcgagctcgccaagcacctcgggctgcggaccgtggccaccaacgactcc
cactacacgcaccgcgaggaccacgagacccacgatgcgctgctgtgcgtccagaccggc
gcgaccatcaacgaccagaatcgcttccgcttcgagggatcggagcactacctcaagagc
gccgaggagatgcgtgagcgcttccgcgaggtgcccgaggcctgtgacgcgaccctcgac
atcgccgagcgctgctcgttggagctgacctttggccagccggcgcttcccgagatcgac
atcccggtccggatcacgggtgcgacctacgacgagcgcgcaggtgagtacctcgccgag
ctggtctggcagggcgcgcgggcgcgctacggcaacgatctcgacgagaccacgagcgag
cggattcgctacgagctctccgtgatcgagtccatgggctttccgggctacttcctcgtg
gtctgggacctgatccgtcatgcccgcgaggctcacattcgcgtcggcccgggacgaggt
agcgcggcgggcagcgtggtcgcttactgcctcgggatcacccagatcgatccgctcgcc
tacgacctcatcttcgagcgcttcctcaacccaggccgcaagcagatgcccgacatcgac
atggacttcgacgagcgctaccgaggcgagatgatccgctacgcggccgagcgctacggg
catgatcacgtcgcccagatcgtgacgttctccaccatcaaggctcgagctgccgtacgc
gacgccgcacgggtccttggctacccgtacgccgtcggcgacaagatcgccaaggcgatg
ccgccgctcgtcatgggacgagacacgccgcttgctgcctgcctcgagctcacgcccggc
cacgaggacggctacgctcaagcggcggcccttcgcgagatggtcgagagcgatccggac
gtggcgcgggtcgtccaggtcgccaagggcctcgaaggcctgcggcgtcaggacggcatc
catgcagccgcggtggtgatctcgcgtgacccgctgacggagtacctgcccatccaacgc
aagcccgatccaggccaggatccatccgaggcacccatcgtcacgcagttcgagatgcat
ggcgtggaggaactcggcctcctgaagatggatttcctcgggctgaggaccctctcggtc
atcgatcgcgccgtggagctgatccgggcgacgcggggcgtcgacctcgacatcgacgcc
atcgccctcgacgacgaggccaccttcgcgatgctgcgcgcgggtgacgccatcggtgtc
ttccagctcgaaggcgggccgatgcgccagctcatgcgccagctcgccccgagccgcttc
gaggacgtggccgcgctcgtggccctctaccgtcccggcccgatggcggccaacatgcac
gtcgactatgccgaccgcaagaacggccgcaagccggtgagctacctgcacccagacctc
gagccggtgctccgcgacacctacggcctcatgatctaccaagagtcgatgatgcgcgtc
gctcagcagatcgcgggctactccctcgaggaagccgacaacttgcgcaaggcctgcggc
aagaagatccggaccctcatcgccgccgaacgcgagaagttcatcgccggttgcgtcgcg
agcggctacggacccgaacttggtaccgcactcttcgacatcatcgagccctttgcggac
tacgccttcaacaagagccacgccttcggctacgggctcgtcagctatcagacggcctac
ctgaaggccaacttccccgtccagttcctcgcggccatcttgacgagtgtgcgcgacgac
aaggacaagttggccgtctacctcgccgacgccgcagcccaccacatcgcggtcctcgtg
cccgacgtcaacgcctccgacgtcgacttcagcgtcacgagcggtcctgagggcgagcag
atccgtttcggccttgctgccgtgcgcaacgtcggggagggcctcgtgcgctcgatcatc
gacgagcgcacgcgaagcggtccgttcacgagctttgccgacttcttgctgcgggtcgat
gcgagcgtcctgaaccgccgcaccttagagtcgctcatcaaggccggggccttcgactcg
ttcggacacccacggcgggccctctacgaagcgctcgagggcgcgctcgaacgggtcaac
gagcggcgccgccagcgcgaccgaggcctcgggtccctcttcgaagagccctccgaggac
gagagcgtcgtcccggatctgcgcctcgacatcggttcggtggagtggagcacgccagag
ctcctcgccttcgagcgcgacatgctcgggctctacgtctccgcgcacccgatgcacggc
gtcaacgtcgaccggctcggacgggacgtcacccccatcttggatctcatcgaggccgat
acgcctcccggcgaaccggtgacggtcgtcggggcgatcacagcgctcgcgcaacggacg
acgcgcaagggcgacctcatggccaccttgcggctcgaagacctgcaagctgggatcgag
gtcatggtgttcccgaagaccatggcagatcacgggctgcacctgaagcaggatgccatc
gtcgcgatcaccggccgtatcgacggccgcgaagacggccgcacgctggtcgcgctcgcc
atcgagcccgtcgatacggccgcgctcaccagtgacgacgcggcggacggcgccactgac
gcggtggtgctgcgactgcccaagcgcctcgccgtcccagattcgctcgttcgactgcgt
aacgtgctcgcggatcacgtcggcacggcgcgtgcggtcctcgacatcgaaggcatgcgc
ttcgagctcgccagcaccagcgtccgccccggatcgagcctggtggggcacctgcgcaac
gtgttcggagatcaggtccgtgtcgactga
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