Aptenodytes forsteri (emperor penguin): 103898564
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Entry
103898564 CDS
T08527
Symbol
SYMPK
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin
KO
K06100
symplekin
Organism
afor
Aptenodytes forsteri (emperor penguin)
Pathway
afor03015
mRNA surveillance pathway
afor04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
afor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103898564 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
103898564 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afor03021
]
103898564 (SYMPK)
03019 Messenger RNA biogenesis [BR:
afor03019
]
103898564 (SYMPK)
Transcription machinery [BR:
afor03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103898564 (SYMPK)
Messenger RNA biogenesis [BR:
afor03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
103898564 (SYMPK)
U7-dependent histone pre-mRNA processing factors
103898564 (SYMPK)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Symplekin_C
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
WDR90_beta-prop_4th
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
WDR55
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
Adaptin_N
CFAP251_N
Cnd1
Motif
Other DBs
NCBI-GeneID:
103898564
NCBI-ProteinID:
XP_019327487
LinkDB
All DBs
Position
Unknown
AA seq
837 aa
AA seq
DB search
KRDIELLLKLIANLNMLLKDENVNVVKKAILTMTQLYKVALQWMVKSKVISELQEACWEM
MAAMASDIILLLDSDNDGIRTHAIKFVEGLIITLSPRMADSDVPKRHENDISLERIPKDH
PYIKYNVLWEEGKAALEQLLKFMVHPAISSINLTAALGSLATIARQRPMFMAEVIQAYET
LHANLPPTLAKSQVSSVRKNLKLHLLSVLRHPSSGDFQPQITTLLVDLGTQQAEIARSMP
SPRDSRKRPRDEPDATLKKMKIGETRVEQTKHLKEEPKEEKAAKPESVVIKRRLSALAQG
QAISVLGAQGSAANLLEEEAPQAKRRPEPIIPATQPRRQFQYLQVLLDLSSHEKDKVRQQ
ALLFIKRMYEKDQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETIKQCL
YLYLALLPHNHKLIHELASVYTEAIADIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKG
AETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLI
KLNPIVVKEVWRSTRLLGTQHGDGASAVSPLNPGELLIALHNIDSSKCDMKSIIKATNLC
FAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQALTMYPRLGGFVMNILSRLIDKTKV
TFVKWLPETERLFLASHASGHLYLYDAEQPCGAAAPQYNLLTQGEGFSVFACKSKTPRNP
LLKWAVGEGALNEFAFSPDGRSLACVSQDGCLRVFHFDSMLLQGMMKSYFGGLLCVCWSP
DGRYVVTGGEDDLVTVWSFAEGRVVARGHGHKSWVNAVAFDPFTGAAQAPQPPELSG
NT seq
2513 nt
NT seq
+upstream
nt +downstream
nt
caagcgggacatcgagctgctgctgaagctcattgccaacctcaacatgctgctgaagga
cgagaacgtcaacgtggtgaagaaggccatcctcaccatgacccagctctacaaggtggc
cctgcagtggatggtgaagtcgaaggtgatcagcgagctgcaggaggcttgctgggagat
gatggcggccatggccagcgacatcatcctcctcctcgactcggacaacgacggcatccg
cacccacgccatcaagttcgtggaggggctcatcatcaccctctcgccccgcatggccga
ctcggacgtccccaaacgtcacgagaacgacatcagcctcgaacgcatccccaaggacca
cccctacatcaaatacaacgtgctgtgggaggaaggcaaggccgccctggagcagctcct
caagttcatggtgcacccggccatctccagcatcaacctgacggccgccttgggttccct
ggccaccatcgcccgccagcggcccatgttcatggccgaggtcatccaagcctacgagac
cctccacgccaacctgccccccaccctggccaagtcgcaggtgagcagcgtccgtaagaa
cctcaagctgcacctcctgagcgtcctgcggcacccgtcctcgggggacttccagcccca
gatcaccaccctcctcgtcgacctgggcacccaacaggccgagatcgcccgcagcatgcc
cagcccccgcgactcccgcaaacgaccccgcgacgagcccgacgccaccctcaagaagat
gaagattggcgagacccgcgtggagcagacgaagcacctgaaggaggagccgaaggagga
gaaggcggccaagccggagagcgtggtgatcaagcggcggctgtcggcgctggcccaggg
ccaggccatctcggtgctgggcgcccaaggctcggccgccaacctgctggaggaggaagc
cccgcaagccaaacgtcgccctgagcccatcatcccagccacgcagccccggcggcagtt
ccagtacctccaagtcctgctggacctcagctcccacgagaaggacaaggtccgccagca
ggccctgctcttcatcaagcgcatgtacgagaaggaccagctgcgggagtacgtggagaa
gttcgccctcaactacctgcagctcctggtgcaccccaacccaccctccgtcctcttcgg
ggccgacaaggacacggaggtggcggcgccgtggacggaggagaccatcaagcagtgcct
ctacctctacctggcgctgctgccccacaaccacaagctcatccacgagctggcctctgt
ctacaccgaggccatcgccgacatcaagcgcaccgtcctgcgggtcatcgagcagccgat
ccgggggatggggatgaactcgcccgaactgctgctgctggtggagaactgccccaaggg
agccgagacgctggtgacacgctgcctgcacagcttgacggacaaagtgcccccctcgcc
cgagctggtgaagagggtccgcgatctctatcacaagcggctgccggacgtgaggttcct
catccccgtcctcaacgggctggagaagaaagaggtgatccaggcgctgcccaaactcat
caagctcaaccccatcgtggtcaaggaggtctggaggtctacccgcctgctggggacgca
gcacggtgacggcgcctcggccgtgtccccgctgaacccgggggagctgctgatcgccct
gcacaacatcgactcctccaagtgcgacatgaagtccatcatcaaggccaccaacctgtg
cttcgccgagcgcaacgtctacacctcggaggtgctggcggtggtgatgcagcagctgat
ggagcagagccccctgcccatgctgctgatgcgcaccgtcatccaggccctcaccatgta
cccccgcctgggcggcttcgtcatgaacatcctctcccgcctgatcgacaagacgaaggt
gaccttcgtcaaatggctgccggagacggagcggctcttcctggcctcccacgccagcgg
ccacctgtacctgtacgacgccgagcagccctgcggggccgcggccccccagtacaacct
cctgacgcagggcgagggcttcagcgtcttcgcctgtaagagcaagaccccccgaaaccc
cctcctcaaatgggcggtgggcgagggggccctcaacgaattcgccttctcgccggacgg
gcgctcgctggcctgcgtcagccaggacggctgcctgcgcgtcttccacttcgactccat
gctgctgcaggggatgatgaagagttatttcggggggttgctctgcgtctgctggagccc
cgacgggcgttacgtggtgacagggggcgaggatgacctggtgaccgtctggtccttcgc
cgaggggcgggtggtggcccgaggtcacggtcacaagtcttgggtcaacgccgtggcctt
cgatcccttcaccggggcggcgcaggccccccagccccccgagctgagcgggg
DBGET
integrated database retrieval system
