Aptenodytes forsteri (emperor penguin): 103900580
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Entry
103900580 CDS
T08527
Symbol
PATL1
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
afor
Aptenodytes forsteri (emperor penguin)
Pathway
afor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103900580 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afor03019
]
103900580 (PATL1)
Messenger RNA biogenesis [BR:
afor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103900580 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
103900580 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
PH
PH_8
PH_6
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
103900580
NCBI-ProteinID:
XP_019328143
LinkDB
All DBs
Position
Unknown
AA seq
669 aa
AA seq
DB search
MAGAHPPAEMPSVSVLDYALPQRPPQAREEERDPSERALPRRSSSPVIGSPPVRAVPIGT
PPKQAAVPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQLCNVPNSSLLGHPFPHSV
SPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRVGQMMSPASGFR
AFFGAPPAPPPSQPQPPXXPVHRSLSLPVAPVCSRVPFLPPASQHRSLNGSVGDRGGPRS
SHQEQMRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDYYYQNYFQKLEKLAAAEEVH
GDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDVR
LRHPLADPCALPXSPSLLQTYSLLLDVEDYERRYLLSLEGERPALMGERKQKICDMYDNL
RGKAPGQERPSDDHFMQIMCIRKGKRLVARILPFLSPEQAADVLMATARNLPFLIKKDAQ
DEVRFRGAGEGSPWLRCEVGIGAGDLPSSAGKAANGGGRLKDGAFLPLLGGRRSSELLAG
PGSGPPSRARRLARRDPASPGRISDKRSKAEMRHTCRGTINLATANITVEDSCNFIISNG
GAQTYHLKASSEVERQRWVTALELAKAKAVKMLEESASRSQAARVSPLLTPVWLPLLGPR
GLVLPLCGT
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggcccacccccccgcggagatgccgtcggtgtccgtgctggactatgctctg
cctcagagacccccgcaggctcgagaggaagagcgggacccctccgagcgggcgctgccc
cggcgttcgtcgtctcctgtcatcgggagccctcctgtccgggctgtccccatcggcacc
cctcccaagcaggctgccgtacccaacttcaaccagcagatcctgtgcccgaagcctgtc
cacatccgagctaccatgcagcagcgctaccccgctccctacggcgagaggatgtccccc
aaccagctctgcaacgtaccgaattcctccctcctgggccaccccttcccccacagcgtc
tctcccgtcctcacccacctgcagagagcgcagctgctcggaggagcccaggccggccga
atgtcccccagccaatttgcccgggtctctggcctggttgggagccccctcccttccgtc
aatcccaagctgctccagggcagagtcgggcagatgatgtctccggccagcgggtttcgt
gcctttttcggggctcccccggctccgcctccctcgcagccgcagcccccnnnnnagcct
gtgcaccgctctctgtcccttcctgtagctcctgtgtgctcacgggtgcccttcttgcct
cctgccagccagcaccggagcctcaacggctccgtgggggaccgagggggcccccggagc
agccaccaggagcagatgcgcaaagacccctacgccaacctcatgctgcagcgggaaaag
gactgggtgtccaagatccagatgatgcagctgcagagcactgatccctacctggatgac
tattactaccagaattacttccagaagctggagaagttggcggcggcggaggaagtccac
ggtgatggtcccaagaaggaacgcactaaactcatcacgccgcaggtggctaagctggag
cacacctacaagccggtgcagtttgagggctcgctggggaagctgacggtctccagcgtg
aacaacccccggaagatgatcgacgcggtggtgacctcccgcagcgaggatgacgtgagg
ctacggcatcccctcgcagatccctgtgccctgccgtgatcgccgtctctcctgcagacg
tacagcctcctcctggacgtggaggactacgagagacgctacctcctgagcctggaaggc
gagcggccggccctgatgggcgagaggaagcagaagatctgcgatatgtatgacaatctg
agggggaaggcgcccgggcaggagaggccaagcgacgaccacttcatgcagatcatgtgc
atccggaaagggaagcgcctcgtggcccggatcctccccttcttgtcacccgagcaagcg
gccgacgtgctcatggcgacggccaggaacctgcctttcctcatcaagaaggatgctcag
gacgaggtgagattccggggggccggggagggttccccctggcttcgctgcgaggtgggg
atcggagcaggggatctcccctcctccgcggggaaggcggcgaacggcggcgggcgtctt
aaggacggggcgtttctgcctctcctgggaggccgcaggagcagcgagctcctggcgggg
cccggctcggggcccccctcccgtgcccgccggctggcacggcgcgacccggcttctccg
ggaaggatttctgataaacggtccaaggcggagatgcggcacacctgccgcggcaccatc
aacctggccacggccaacatcaccgtggaggactcctgcaacttcatcatctccaacggc
ggggcccagacctaccacctgaaggccagctcggaggtggaacggcaacgctgggtcacc
gccctggagctggccaaggccaaagctgtcaagatgctggaggagtcagcctcccggagc
caagcggcgcgcgtcagccccctgcttacgcccgtgtggctcccgctccttgggccccgg
gggctggttttgcccctctgcggaacgtga
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integrated database retrieval system
