Acidithiobacillus ferriphilus: K1Y48_01850
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Entry
K1Y48_01850 CDS
T07843
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
afp
Acidithiobacillus ferriphilus
Pathway
afp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1Y48_01850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afp03019
]
K1Y48_01850
03009 Ribosome biogenesis [BR:
afp03009
]
K1Y48_01850
Enzymes [BR:
afp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K1Y48_01850
Messenger RNA biogenesis [BR:
afp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K1Y48_01850
Ribosome biogenesis [BR:
afp03009
]
Prokaryotic type
rRNA helicases
K1Y48_01850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UEP59436
LinkDB
All DBs
Position
complement(368418..370247)
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AA seq
609 aa
AA seq
DB search
MSQESDLRFTDFALAEPVQKAVAEIGYEQPSPIQAQSIPPLLAGHDVIGLAQTGTGKTAA
FALPLLSRVDLSLRVPQLLVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQSMSLQL
KQLQRGVQVVVGTPGRIQDHLRRKTLRLDQLQAVVLDEADEMLRMGFIDAVEDILKHTPD
SRQVALFSATMPDAIRRIAKTYLRDPLEIRVKSATTTVAAIRQRYWQVSGTHKLDALTRI
LEVEESNAWLVFVRTKTATVELAERLEARGYACGALNGDLSQALREQTIERLKAGTLDIV
VATDVAARGLDVERITHVINYDIPNDTEAYVHRIGRTGRAGRAGDAILFVAPRERHLLHA
IERATGQTITAMHLPSIEDVAGRRMSQFKDQLSEVLNSQDLAVFESLIADYQQEKDVGLG
EIAAALAYMVQKERPLVPVEVPVSKPMRSDAGSSGRPPSSRRRSEDERGGGSARPPRGGG
ATSRGGEDVPMRRFRLDVGESHGAQVKNIVGAIANEAGIPSRNIRKVQIGTEHTTVELPA
DIQASVLQHLQKVWVSGRPLQIAPTDAGAPLGRAAPAKPRKILSARPTKSEYKPKERGAG
PVKRKKPAR
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagaatccgatctgcgctttactgattttgccctcgctgaaccggtccagaaa
gcggtggcagagatcggctacgaacaaccatcgccgattcaggcgcagagcatcccgccg
ctgctggcggggcacgacgttatcgggctggcgcagaccggtaccggcaaaaccgctgcg
tttgcgctgccgctgttaagccgtgttgatctcagcttgcgcgtgccgcagttactggtg
ctggcgcccacccgtgagctcgctattcaagtggctgaggcgatgcagagctacgccaag
tttctccccggattccatgtgctgcccatctatggcggacagtccatgagcctgcaactc
aagcagctacagcgtggtgtgcaagtggtagtgggtacacccggacgcattcaggatcac
ctgcgtcgcaaaaccctgcgcctggaccagttgcaggccgtggtgctggatgaagccgac
gaaatgctgcgcatgggcttcattgacgcggtggaggatatcctcaaacacacgcccgat
agtcggcaggtggcactcttctccgcgactatgccggatgccattcgccgcatcgccaaa
acctatttgcgcgatcccctggaaatccgtgttaaatcggcgacgactacggtggccgcc
attcgccagcgttattggcaggtcagcggtacccacaagctggatgcccttacccgtatt
ttggaagtagaggagagtaatgcctggctggtttttgtgcgtacaaaaacggcgacggta
gagttggcggagcgcctggaggcacgcggctatgcctgtggcgccctcaatggcgatctc
agtcaggcgttgcgcgaacagaccattgagcgcctgaaggcggggacgctggatattgtt
gttgcgaccgatgtggcggcccgtggtttggatgtcgaacggatcacccatgtgatcaat
tatgacattccgaatgacaccgaggcctatgttcaccgtattggtcgtactggacgtgcc
ggacgtgccggggatgcaattctctttgtcgcgccgcgcgaacgccatttgctgcacgcc
atcgagcgggcgacggggcagacgattacagccatgcatctgcccagcatagaagatgtt
gcgggtcgacggatgagccagttcaaggatcaattgtcagaagtactgaatagtcaggat
cttgcggtttttgagtccctcattgcggattatcagcaggaaaaggacgtaggtttggga
gaaatcgctgcggcactggcttacatggtgcagaaagagcgcccactggttcctgtcgag
gttccggtatcaaagccaatgcgcagcgacgccgggagttccggccgaccgccgtcatcg
cgtcgccgctctgaagatgaacggggtggtggcagtgcacgtccgccgcgcggcggtggc
gccacctcgagagggggggaggatgtgccgatgcgccgcttccgtctggatgtgggtgaa
agccatggtgcgcaagtcaaaaacattgttggcgcgatcgccaatgaggctgggataccc
agccgcaatatccgcaaggtacagattggcaccgagcataccactgttgagcttcctgcg
gatatacaagcgtcagttttgcagcatttgcaaaaggtctgggtctcggggcggcctttg
cagatcgccccgaccgatgcgggcgcgccactgggtcgtgctgcccctgcgaagccgcgc
aagatactctccgccaggccgacaaaaagtgagtacaaacccaaggagcgtggcgctggg
ccagtaaagcggaagaagcccgcgcgatag
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