Acidithiobacillus ferriphilus: K1Y48_02330
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Entry
K1Y48_02330 CDS
T07843
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
afp
Acidithiobacillus ferriphilus
Pathway
afp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
afp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K1Y48_02330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afp03400
]
K1Y48_02330
Enzymes [BR:
afp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
K1Y48_02330
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
K1Y48_02330
DNA repair and recombination proteins [BR:
afp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
K1Y48_02330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_6
NFACT_N
DNA_ligase_ZBD
DUF7129
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
UEP59516
LinkDB
All DBs
Position
complement(468796..469599)
Genome browser
AA seq
267 aa
AA seq
DB search
MAELPEIELLRQKLRRSILHKRIGVMRMQNAKGESLTDGAGMEDAALQGKAITDLHRYGQ
YLFLELDRKNILALQLGGELSGELERGSAQAAGEEEPRAALEIQINGQQRLRLQGTQLSN
RLRLLDENSDVDFLTKLGPDPLMVRGEGLGVLREALSRRRSALRNILLDDGFAPGIGGIW
ADEILFQARLRPDRTATSLSEEERERFLEQIPKVLDRAVRCQAKSNLLPKTFLTRHRADG
HCPSCGGALETLSVGGKSALFCLTCQS
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atggccgagttgccagaaatagaactgctcagacaaaaactgcggcgcagtatcctgcac
aagcggatcggcgtcatgcggatgcagaatgccaaaggcgagtcactgaccgatggcgcc
gggatggaagatgccgccctccagggcaaggccatcaccgacctgcatcgctacggtcaa
tacctttttctggaactggatcgcaagaacatcctcgccctgcagttgggcggtgagttg
agcggcgaacttgagcgcggttctgctcaggcggcgggcgaggaagagccgcgtgcggca
ttggagattcagatcaatggccagcagcgcttgcgtcttcaggggactcagttgagtaat
cgcctgcgcctgctggatgaaaacagcgatgtggacttcctgaccaagcttggccccgat
ccgttgatggtgcgaggggaggggcttggtgtattgcgcgaagccctgagccgtcgccgc
agcgccctgcgtaacatcctgttggatgacggcttcgcgccgggcatcggcggcatctgg
gcggatgaaatcctttttcaggcccgcctgcggccggatcgcaccgcgaccagcctcagc
gaagaagagcgcgagcgtttcctggagcaaatccccaaggtgctggatcgtgccgtgcgc
tgtcaggcgaagagcaacctgctgcccaagacctttctcacccgccatcgggcggacggg
cactgtccgagttgtggcggcgcgctggagactctttcggtggggggcaagagcgcgctg
ttctgcctgacctgccagtcttaa
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