Acidithiobacillus ferriphilus: K1Y48_04085
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Entry
K1Y48_04085 CDS
T07843
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
afp
Acidithiobacillus ferriphilus
Pathway
afp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K1Y48_04085 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afp03400
]
K1Y48_04085 (recB)
Enzymes [BR:
afp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K1Y48_04085 (recB)
DNA repair and recombination proteins [BR:
afp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K1Y48_04085 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
ResIII
Motif
Other DBs
NCBI-ProteinID:
UEP60257
LinkDB
All DBs
Position
817803..821399
Genome browser
AA seq
1198 aa
AA seq
DB search
MTTILDPLHLPLHGSRLIEASAGTGKTWTIAALYLRLILGHGAEGERFARALLPEDILVM
TFTRAATQELKERIRDRLQSAARYFLGSDHATPPDPFLETLLADYSSPKTRAQAAHQLVL
AADAMDDSAIFTIDAWCQRTLREHAFATGSDFRETLLLDETDLRDDAVRDFWRQEIYPLS
EPALSEVIQLFSSPDKVRQETETLCRLDPPLPAPKSTLADWLPAAVTAPRRQLAALKAQW
AAEHDAFAEWLLGLVNGPKANNPLNGNSLSAAIVTRTLAALRDWADHSDILIPDEPDKCQ
RLSASKLPDYCKNKPPLVVHPAAELLDTLLSELEAIAQQFTQLYGEIRSHAAAWINARLS
QLKARSGQVSFTDYQQRLAGVLHDKTQGPALAARLRQKYPATLIDEFQDTSALQYQVFDD
IYHAADNDPDTLLLLIGDPKQSIYAFRGADIDSYLQARRLTEGRHYALGINYRSSHALVS
ALNTLYTAAEHDDPQGAFAHAAPGADNPLPYQPVQAHGHEKHWQTAGQPAPALTFWAATE
SLTKDHYKALLSEQTAECIATLLADPTAGFAADGKDPKPVQPKDIAILVRDRHEAASIRQ
ALNRRQLRSVFLSAQDSVYASEEARELLLWLEAVAEPEDARRLRVALALPLLRQTLSALD
AFNQDEAAWEAQLEQFQDLSRQWRRQGVLAMLHHGIHQFGIAARLLTQPEGERRLTNLLH
LGELLQQASATLDGPEALIRHLREAIAAGSDQSGAHILRLESDAELLRVVTIHAAKGLQY
PLVFLPFIATSKAARASPFTVTHSAEGQPAIRWESGDTAAAERARLQEDLRLLYVALSRA
EHALWLGLAAPKNAGTPIFASSAIAHLLGSERPARDLATLLEDCARLSPEIRVETLANDI
PTTLAVQHCNNTLDPPAEYTASFEKHWGVASFSHLVRDLAADPSAPQAPRRARTGAPWHR
YPQGRNAGSFLHDQLQHLAQNGFAQTGQDLFAERLRKACTQADLSNWAEETAEWLQAIVH
SPLAPLPATLHDLTDYQSEMAFWFPSDALRSDDLDRLCKQHIFPGAERPKLPQRVIHGMM
RGFMDLVFSHAGRYYVLDYKSNVLGGGDAEYHAEALRDATLGHRYELQSSLYQLALHRLL
RQRMSNSYRPATQLGGTLFFFLRGLRGPEQGMLHLPADLALLDALDGLFGLPQRIAQP
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgatcctcgaccccctgcacctgcccctgcacggcagccgcctcatcgaggcc
agcgccggtaccggcaaaacctggaccatcgccgccctctatctgcgcctgatccttgga
cacggcgcagagggtgagcgcttcgcacgcgccctcctgcccgaagatatcctggtgatg
accttcacccgtgccgccacccaggagctcaaggagcgtattcgcgaccgcctgcaaagt
gccgcccgatatttcctcggttcagaccacgcgacaccgccggacccctttctcgaaacg
ctgttggccgactactccagccccaagacccgcgcccaagccgcgcaccaactggtcctc
gccgccgacgccatggatgacagcgccattttcaccatcgacgcctggtgccagcgcacc
ctgcgcgagcacgcctttgccaccggcagcgatttccgcgaaacgctgctcctggatgaa
acggatctgcgcgacgacgccgtgcgcgatttctggcggcaggaaatctacccgctgagc
gaacccgccctcagtgaggtcatccaactcttttccagccccgataaagtccggcaagaa
acagaaaccctgtgcagactcgatccgcccctgcctgcccccaaatctacgctggcggac
tggctgcccgctgccgtcaccgcgccccggcggcaactcgccgccctcaaggcgcaatgg
gcggcggaacatgatgcttttgcggaatggttgttagggctcgtaaacggtcccaaagcg
aacaatccattgaatggtaatagcctaagcgcggctattgtcacccgaaccctcgccgca
ttgcgtgattgggctgaccattccgatatactgatccccgacgaaccggacaaatgtcaa
cgcctttctgccagcaaactgcccgactattgcaagaacaagccgcctctcgtcgttcac
cccgctgccgagctactggataccctgctcagtgaattagaggccatcgctcaacaattc
acccaactgtacggcgaaattcgcagccacgccgccgcctggatcaacgctcgactgagc
cagctcaaggcccggagcgggcaggtcagctttaccgactatcagcaacgcctcgccggg
gtactgcacgacaaaactcaaggaccggcactcgccgcccgcctgcggcagaaataccca
gccaccctcatcgacgagtttcaggatacctccgccctgcaatatcaggtcttcgacgac
atctaccatgccgccgacaacgaccccgacaccctgcttctgctcatcggtgaccccaaa
caatccatctacgcctttcgcggcgccgacatcgacagttatttgcaagcccgtcgcctg
accgaaggccgccactacgcgctcggcatcaattatcgctccagccacgcactggtcagc
gcccttaataccctctataccgccgccgaacacgacgaccctcaaggcgcttttgcccat
gcggcgccgggcgccgacaacccgctcccctatcagccggtgcaggcccatggtcacgaa
aaacactggcaaacagccggacagcccgccccggcgctcaccttctgggcggcaacggag
tcactcaccaaggaccattacaaggcgctgctgagcgagcagacagcggaatgcatcgcc
accttgctcgccgacccaaccgcgggcttcgccgcagatggaaaagatccaaagcctgtc
cagcccaaagacatcgccatcctcgtccgcgaccgccatgaagccgccagcatccgtcag
gccctcaaccgccgtcagttacgcagcgtctttctctcggcgcaggattccgtctatgcc
agtgaggaagcccgcgaactgctcctctggctggaagccgtcgccgaacccgaagatgcc
cgccgcctgcgcgtcgccctcgccctgccgctgctgagacagaccctgagcgccctggat
gcctttaatcaggacgaagccgcctgggaggcgcaactggagcaattccaggacctgtcc
cggcaatggcggcggcagggcgtgctggccatgctccaccacggcatccaccagttcggt
atcgccgcccgcttgttgacgcagcccgagggcgaacgccgcctcaccaacctgctccac
ctcggcgaactcctgcaacaggcgagcgccaccctcgacggccccgaagccctcattcgc
catctgcgcgaagccatcgcggccgggagtgatcagagcggcgcccacatcctgcgcctg
gaaagcgatgccgagctgttgcgcgtagtcaccatccacgccgccaaaggcctgcaatat
ccgctggtattcctgcccttcatcgccaccagcaaagcggccagggccagtccgttcacc
gtcacgcacagcgccgaagggcaacccgccatccgctgggaaagcggcgacacggcagcc
gcggaaagggcacgactgcaagaagatctccgcctcctctacgtcgccctcagccgcgcc
gaacacgccctctggctgggtctcgcggcacccaagaacgcgggaacgccgatttttgca
agcagcgccatcgcccacctgctgggcagcgaacgccccgcccgtgatctcgccaccttg
ctcgaagactgcgcccgactttcccccgaaatccgcgtcgagacgctcgcgaacgacatc
cccacgacgctggccgtgcagcactgcaacaacacccttgatccgcctgcggaatatacc
gccagcttcgagaagcactggggcgtcgccagcttctcccatctggtgcgcgatctcgcg
gccgacccgtcggcgccacaggcaccccggcgcgcgcggaccggcgctccctggcatcgc
tacccgcaaggcaggaatgccggcagctttctccacgaccaactgcaacacctcgcccag
aacggctttgcccaaaccggtcaggacctctttgccgaacgattgcgcaaggcctgtact
caggccgacctgagcaattgggccgaggagaccgccgaatggctgcaagccatcgtccac
agccctctcgcccccctgccggcaaccctccacgaccttacggattatcaaagcgaaatg
gccttctggtttcccagcgacgcactgcgcagcgatgacctggacaggctctgcaaacag
cacatttttcccggcgcagagcgccccaaactcccccagcgcgtcatccacggcatgatg
cgcggcttcatggatctggttttcagccatgccggacgctattacgtcctcgactacaaa
tccaacgtcctcggcggcggcgatgcggagtaccacgccgaagccctgcgcgacgccact
ctcggccatcgctatgagttgcaatccagcctctatcaactggccctgcaccgtctgctg
cgccagcgcatgagcaacagctaccggcccgcaacgcagctcggcggtacccttttcttt
ttcctgcgcggactgcgaggaccggagcaaggcatgctccatcttcccgccgatctcgcc
ctgctcgacgccctcgacggcctgttcggcctgccgcagcgtatagcccagccatga
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